Normalization performance report

Parameters used to test normalization

## $variables
## [1] "Batch"       "Sample.Set"  "Slide"       "sentrix_col" "sentrix_row"
## [6] "Sex"         "AGE_all"    
## 
## $control.pcs
##  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20
## 
## $batch.pcs
##  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20
## 
## $batch.threshold
## [1] 0.01
## 
## $colours
## NULL

Control probe scree plots

The variance captured by each principal component.

plot of chunk unnamed-chunk-19

plot of chunk unnamed-chunk-20

plot of chunk unnamed-chunk-21

Principal components of the control probes

The following plots show the first 3 principal components of the control matrix colored by batch variables. Batch variables with more than 10 levels are omitted.

plot of chunk unnamed-chunk-23

plot of chunk unnamed-chunk-25

plot of chunk unnamed-chunk-27

plot of chunk unnamed-chunk-29

plot of chunk unnamed-chunk-31

Control probe associations with measured batch variables

Principal components of the control probes were regressed against batch variables. Shown are the \(-log_{10}\) p-values for these regressions. The horizontal dotted line denotes \(p = 0.05\) in log-scale.

plot of chunk unnamed-chunk-33

plot of chunk unnamed-chunk-35

plot of chunk unnamed-chunk-37

plot of chunk unnamed-chunk-39

plot of chunk unnamed-chunk-41

plot of chunk unnamed-chunk-43

plot of chunk unnamed-chunk-45

The following plots show regression coefficients when each principal component is regressed against each batch variable level along with 95% confidence intervals. Cases significantly different from zero are coloured red (p < 0.01, t-test).

plot of chunk unnamed-chunk-46

plot of chunk unnamed-chunk-47

plot of chunk unnamed-chunk-48

plot of chunk unnamed-chunk-49

plot of chunk unnamed-chunk-50

plot of chunk unnamed-chunk-51

plot of chunk unnamed-chunk-52

plot of chunk unnamed-chunk-53

plot of chunk unnamed-chunk-54

plot of chunk unnamed-chunk-55

plot of chunk unnamed-chunk-56

plot of chunk unnamed-chunk-57

plot of chunk unnamed-chunk-58

plot of chunk unnamed-chunk-59

plot of chunk unnamed-chunk-60

plot of chunk unnamed-chunk-61

plot of chunk unnamed-chunk-62

plot of chunk unnamed-chunk-63

plot of chunk unnamed-chunk-64

plot of chunk unnamed-chunk-65

batch.variable batch.value principal.component test p.value estimate lower upper
Sample.Set PC1 F-test 9.80e-09 18.6225
Sample.Set George_Mellick PC1 t-test 1.03e-07 -1.6732 -2.32841 -1.01791
Sample.Set Martin_Kennedy PC1 t-test 7.91e-10 2.1334 1.36401 2.90288
Slide PC1 F-test 6.39e-106 6.9587
Slide 3998888177 PC1 t-test 2.28e-04 -5.0566 -8.12061 -1.99258
Slide 3998888180 PC1 t-test 3.29e-04 -4.9274 -7.99193 -1.86278
Slide 3998888008 PC1 t-test 1.11e-06 6.6728 3.61705 9.72864
Slide 3998888022 PC1 t-test 1.19e-03 4.6442 1.44214 7.84632
Slide 3998888041 PC1 t-test 1.92e-03 4.4472 1.24439 7.65005
Slide 3998888042 PC1 t-test 5.83e-06 6.2255 3.16076 9.29021
Slide 3998888045 PC1 t-test 2.04e-03 4.4218 1.21890 7.62475
Slide 3998888068 PC1 t-test 3.91e-09 8.0784 5.02290 11.13397
Slide 3998888071 PC1 t-test 9.60e-03 3.7136 0.50834 6.91895
Slide 3998888080 PC1 t-test 2.82e-03 4.1004 1.03262 7.16823
Slide 3998888083 PC1 t-test 4.34e-06 6.2971 3.23919 9.35501
Slide 3998888086 PC1 t-test 1.59e-03 4.5248 1.32223 7.72731
Slide 101070190050 PC1 t-test 1.25e-03 -4.4283 -7.49487 -1.36168
Slide 101103430091 PC1 t-test 5.78e-03 -3.7896 -6.85848 -0.72075
Slide 101103430120 PC1 t-test 7.66e-05 -5.6641 -8.86185 -2.46639
Slide 101103430129 PC1 t-test 3.86e-06 -6.3305 -9.38825 -3.27279
Slide 3998888017 PC1 t-test 1.56e-04 5.4155 2.21662 8.61436
Slide 3998888065 PC1 t-test 1.87e-03 4.2686 1.20143 7.33582
Slide 3998888069 PC1 t-test 3.77e-03 3.9769 0.90868 7.04515
Slide 100973270155 PC1 t-test 5.00e-03 4.2197 0.85982 7.57959
Slide 100973330088 PC1 t-test 8.39e-03 -3.6199 -6.68931 -0.55050
Slide 100973330048 PC1 t-test 4.56e-03 -3.8945 -6.96297 -0.82594
Slide 100973330051 PC1 t-test 1.26e-03 -4.4249 -7.49155 -1.35833
Slide 101070190109 PC1 t-test 5.81e-03 3.9548 0.75027 7.15935
Slide 101070190071 PC1 t-test 2.85e-04 4.9789 1.91460 8.04330
Slide 101103430113 PC1 t-test 1.08e-03 -4.6848 -7.88669 -1.48283
Slide 101103430114 PC1 t-test 3.85e-03 -4.3439 -7.70334 -0.98441
Slide 101103430118 PC1 t-test 1.54e-03 -4.3481 -7.41501 -1.28121
Slide 200078650218 PC1 t-test 4.58e-05 -5.8367 -9.03359 -2.63978
Slide 200078650234 PC1 t-test 6.69e-06 -6.1728 -9.23143 -3.11426
Slide 200078650257 PC1 t-test 1.72e-07 -7.1585 -10.21140 -4.10564
Slide 200078650003 PC1 t-test 1.10e-05 6.2948 3.10024 9.48943
Slide 200078650130 PC1 t-test 5.61e-03 3.9712 0.76671 7.17569
Slide 200078650021 PC1 t-test 7.22e-03 4.2561 0.71473 7.79749
Slide 200078650088 PC1 t-test 6.91e-03 3.8726 0.66780 7.07742
Slide 200090270158 PC1 t-test 2.73e-03 -4.1135 -7.18125 -1.04573
Slide 200078650173 PC1 t-test 5.26e-05 5.7912 2.59412 8.98837
Slide 200090280040 PC1 t-test 1.93e-03 -4.2571 -7.32430 -1.18983
Slide 200090280042 PC1 t-test 2.86e-04 -4.9775 -8.04184 -1.91312
Slide 200078650112 PC1 t-test 8.64e-03 -3.9478 -7.30856 -0.58703
Slide 200078650123 PC1 t-test 9.87e-04 -4.5210 -7.58726 -1.45479
Slide 200078650258 PC1 t-test 1.02e-03 -4.7059 -7.90774 -1.50404
sentrix_row PC1 F-test 2.65e-226 283.1902
sentrix_row 1 PC1 t-test 7.10e-111 -6.1348 -6.70429 -5.56541
sentrix_row 2 PC1 t-test 1.39e-20 -2.7547 -3.40564 -2.10370
sentrix_row 4 PC1 t-test 6.52e-04 1.0061 0.35108 1.66119
sentrix_row 5 PC1 t-test 4.02e-29 3.1955 2.57212 3.81890
sentrix_row 6 PC1 t-test 7.82e-78 5.1943 4.60464 5.78404
Batch PC2 F-test 6.16e-41 188.3769
Batch 1 PC2 t-test 2.67e-41 -1.4989 -1.73604 -1.26181
Batch 2 PC2 t-test 8.16e-37 1.3747 1.14360 1.60576
Sample.Set PC2 F-test 8.90e-05 9.3731
Sample.Set George_Mellick PC2 t-test 1.36e-06 -0.7903 -1.13140 -0.44920
Sample.Set Martin_Kennedy PC2 t-test 1.46e-04 0.6685 0.27709 1.05991
Slide PC2 F-test 3.04e-240 15.3707
Slide 3998888170 PC2 t-test 4.07e-03 -1.9840 -3.52756 -0.44041
Slide 3998888177 PC2 t-test 6.86e-08 -3.7158 -5.25075 -2.18076
Slide 3998888180 PC2 t-test 5.58e-14 -5.1826 -6.71338 -3.65182
Slide 3998888059 PC2 t-test 1.68e-09 -4.5481 -6.22866 -2.86755
Slide 3998888061 PC2 t-test 2.73e-13 -5.0656 -6.60561 -3.52556
Slide 3998888087 PC2 t-test 4.25e-04 -2.4326 -3.97443 -0.89072
Slide 3998888176 PC2 t-test 2.55e-06 -3.2504 -4.79173 -1.70907
Slide 101103430091 PC2 t-test 4.95e-03 -1.9449 -3.49144 -0.39828
Slide 101103430120 PC2 t-test 8.45e-12 -4.9011 -6.49649 -3.30580
Slide 101103430129 PC2 t-test 4.18e-13 -5.0222 -6.56131 -3.48310
Slide 3998888023 PC2 t-test 1.41e-03 -2.3022 -3.91319 -0.69124
Slide 3998919138 PC2 t-test 1.32e-07 -3.6426 -5.18135 -2.10381
Slide 3998920007 PC2 t-test 1.75e-08 -3.8965 -5.43689 -2.35603
Slide 100973270162 PC2 t-test 4.49e-03 -1.9626 -3.50620 -0.41891
Slide 100973330047 PC2 t-test 5.19e-07 -3.4714 -5.01349 -1.92921
Slide 100973330065 PC2 t-test 4.16e-03 -2.0667 -3.67853 -0.45488
Slide 100973270085 PC2 t-test 2.21e-03 -2.2073 -3.81862 -0.59596
Slide 100973270089 PC2 t-test 2.37e-06 -3.3969 -5.00271 -1.79115
Slide 100973270094 PC2 t-test 2.88e-06 -3.3686 -4.97458 -1.76270
Slide 100973270100 PC2 t-test 2.05e-03 -2.1293 -3.67236 -0.58625
Slide 101070190089 PC2 t-test 5.51e-03 1.9174 0.37357 3.46117
Slide 101070190097 PC2 t-test 1.34e-03 2.4239 0.73478 4.11307
Slide 101070190098 PC2 t-test 9.18e-03 1.7998 0.25560 3.34396
Slide 101070190099 PC2 t-test 8.69e-03 1.8126 0.26845 3.35673
Slide 101070190110 PC2 t-test 8.29e-03 1.8239 0.27975 3.36796
Slide 101070190122 PC2 t-test 2.93e-04 2.6100 1.00026 4.21969
Slide 101070190033 PC2 t-test 8.69e-04 2.4005 0.78990 4.01108
Slide 101070190051 PC2 t-test 2.13e-03 2.2143 0.60300 3.82561
Slide 101070190109 PC2 t-test 2.14e-12 5.0488 3.45136 6.64623
Slide 101070190111 PC2 t-test 1.57e-07 3.9552 2.27378 5.63656
Slide 101070190115 PC2 t-test 2.79e-03 2.2610 0.57123 3.95073
Slide 101130760004 PC2 t-test 4.96e-05 2.7995 1.25929 4.33967
Slide 101070190071 PC2 t-test 1.16e-03 2.2428 0.70018 3.78543
Slide 101070190088 PC2 t-test 1.14e-03 2.3459 0.73509 3.95670
Slide 101070190121 PC2 t-test 6.55e-07 3.4281 1.89135 4.96492
Slide 101070190137 PC2 t-test 7.11e-06 3.5727 1.79732 5.34808
Slide 200078650234 PC2 t-test 4.53e-05 -2.8202 -4.36361 -1.27669
Slide 200078650257 PC2 t-test 3.73e-05 -2.8449 -4.38490 -1.30497
Slide 200078650086 PC2 t-test 2.01e-03 2.2269 0.61565 3.83816
Slide 200078650115 PC2 t-test 7.91e-03 1.9158 0.30346 3.52811
Slide 200078650130 PC2 t-test 3.90e-05 2.9631 1.35502 4.57118
Slide 200078650136 PC2 t-test 2.27e-03 2.2011 0.58975 3.81245
Slide 200078650021 PC2 t-test 9.82e-03 2.0580 0.27618 3.83976
Slide 200078650055 PC2 t-test 2.75e-04 2.6216 1.01198 4.23132
Slide 200078650090 PC2 t-test 1.99e-05 3.2214 1.53579 4.90694
Slide 200090270100 PC2 t-test 5.94e-04 2.3710 0.82884 3.91307
Slide 200090270102 PC2 t-test 5.44e-04 2.4927 0.88246 4.10289
Slide 200090270152 PC2 t-test 7.37e-05 2.9946 1.30792 4.68131
Slide 200090280009 PC2 t-test 2.24e-03 2.3108 0.62119 4.00033
Slide 200078650085 PC2 t-test 1.69e-03 2.3739 0.68459 4.06326
Slide 200078650206 PC2 t-test 7.14e-03 1.9405 0.32824 3.55274
Slide 200078650001 PC2 t-test 1.25e-05 -3.9403 -5.95295 -1.92762
Slide 200078650246 PC2 t-test 9.55e-03 1.7904 0.24623 3.33464
Slide 200090270021 PC2 t-test 2.70e-05 -3.5421 -5.42595 -1.65817
Slide 200078650089 PC2 t-test 7.21e-03 -2.0321 -3.72259 -0.34153
Slide 200078650112 PC2 t-test 4.10e-06 -3.4773 -5.16156 -1.79313
Slide 200078650187 PC2 t-test 2.09e-05 -3.0649 -4.67244 -1.45730
Slide 200078650258 PC2 t-test 5.18e-05 -2.9156 -4.52396 -1.30734
sentrix_row PC2 F-test 1.43e-79 83.7011
sentrix_row 1 PC2 t-test 4.73e-58 2.2913 1.98513 2.59746
sentrix_row 2 PC2 t-test 2.85e-06 0.7040 0.37060 1.03732
sentrix_row 4 PC2 t-test 1.12e-11 -1.0101 -1.33871 -0.68146
sentrix_row 5 PC2 t-test 3.25e-14 -1.1222 -1.44829 -0.79610
sentrix_row 6 PC2 t-test 3.56e-17 -1.2292 -1.55026 -0.90818
Batch PC3 F-test 7.93e-133 708.4317
Batch 1 PC3 t-test 9.24e-128 -1.7554 -1.90229 -1.60849
Batch 2 PC3 t-test 4.10e-138 1.9632 1.80623 2.12013
Sample.Set PC3 F-test 5.92e-03 5.1440
Sample.Set George_Mellick PC3 t-test 8.23e-04 0.4096 0.15393 0.66535
Slide PC3 F-test 0.00e+00 25.3366
Slide 3998888019 PC3 t-test 8.00e-03 -1.2905 -2.37824 -0.20283
Slide 3998888109 PC3 t-test 7.14e-04 -1.7186 -2.85301 -0.58415
Slide 3998888170 PC3 t-test 2.74e-04 -1.7690 -2.85488 -0.68312
Slide 3998888171 PC3 t-test 2.25e-05 -2.1504 -3.28281 -1.01795
Slide 3998888177 PC3 t-test 1.31e-07 -2.5608 -3.64237 -1.47918
Slide 3998888180 PC3 t-test 1.32e-04 -1.8580 -2.94346 -0.77251
Slide 3998888024 PC3 t-test 8.75e-04 -1.6186 -2.70512 -0.53209
Slide 3998888041 PC3 t-test 1.21e-04 -1.9517 -3.08508 -0.81827
Slide 3998888042 PC3 t-test 2.48e-03 -1.4721 -2.55915 -0.38499
Slide 3998888045 PC3 t-test 3.75e-03 -1.4726 -2.60799 -0.33727
Slide 3998888071 PC3 t-test 3.04e-03 -1.5056 -2.64088 -0.37039
Slide 3998888080 PC3 t-test 2.47e-03 -1.4726 -2.55971 -0.38556
Slide 3998888081 PC3 t-test 1.20e-04 -1.8701 -2.95548 -0.78464
Slide 3998888086 PC3 t-test 2.98e-03 -1.5087 -2.64398 -0.37351
Slide 3998888087 PC3 t-test 2.24e-06 -2.2971 -3.38029 -1.21388
Slide 3998919138 PC3 t-test 1.53e-05 -2.1007 -3.18501 -1.01645
Slide 3998920007 PC3 t-test 2.75e-05 -2.0378 -3.12239 -0.95318
Slide 100973270162 PC3 t-test 2.28e-03 1.4840 0.39694 2.57101
Slide 100973330047 PC3 t-test 4.09e-03 1.3967 0.30939 2.48409
Slide 100973330088 PC3 t-test 1.02e-07 -2.5825 -3.66400 -1.50108
Slide 101070190049 PC3 t-test 3.80e-04 -1.7281 -2.81412 -0.64200
Slide 101070190061 PC3 t-test 1.32e-07 -2.6736 -3.80304 -1.54422
Slide 101070190062 PC3 t-test 8.60e-03 -1.2787 -2.36640 -0.19092
Slide 101070190063 PC3 t-test 7.14e-08 -2.8619 -4.04572 -1.67800
Slide 101070190070 PC3 t-test 4.90e-05 -1.9733 -3.05821 -0.88835
Slide 101070190090 PC3 t-test 4.63e-08 -2.7684 -3.89717 -1.63959
Slide 101070190150 PC3 t-test 1.29e-06 -2.3509 -3.43380 -1.26802
Slide 101130760005 PC3 t-test 8.11e-05 -1.9157 -3.00086 -0.83045
Slide 100973270089 PC3 t-test 1.42e-11 3.4350 2.30446 4.56557
Slide 100973270094 PC3 t-test 2.22e-06 2.3994 1.26837 3.53052
Slide 100973270100 PC3 t-test 2.36e-04 1.7878 0.70198 2.87357
Slide 100973270129 PC3 t-test 2.11e-03 -1.4956 -2.58257 -0.40859
Slide 100973270135 PC3 t-test 4.52e-04 -1.7057 -2.79181 -0.61950
Slide 100973330003 PC3 t-test 2.18e-03 -1.4909 -2.57793 -0.40391
Slide 100973330051 PC3 t-test 6.60e-03 -1.3218 -2.40939 -0.23419
Slide 101070190123 PC3 t-test 1.26e-04 -1.8641 -2.94953 -0.77863
Slide 101070190148 PC3 t-test 9.13e-06 -2.1553 -3.23933 -1.07135
Slide 101070190017 PC3 t-test 1.18e-09 2.9614 1.87760 4.04520
Slide 101070190018 PC3 t-test 4.43e-04 1.7837 0.64955 2.91786
Slide 101070190033 PC3 t-test 6.10e-05 2.0403 0.90411 3.17655
Slide 100994770033 PC3 t-test 8.53e-23 5.0423 3.90927 6.17530
Slide 101070190038 PC3 t-test 5.84e-03 1.4685 0.27781 2.65928
Slide 101070190071 PC3 t-test 7.07e-05 1.9315 0.84638 3.01664
Slide 101103430112 PC3 t-test 7.14e-06 2.1857 1.09946 3.27200
Slide 200078650003 PC3 t-test 4.07e-26 5.4061 4.27900 6.53312
Slide 200078650086 PC3 t-test 9.23e-03 1.3229 0.18700 2.45872
Slide 200078650115 PC3 t-test 2.97e-05 2.1190 0.98640 3.25158
Slide 200078650130 PC3 t-test 7.41e-04 1.7134 0.57892 2.84782
Slide 200078650250 PC3 t-test 1.52e-06 2.3349 1.25196 3.41793
Slide 200078650021 PC3 t-test 1.06e-05 2.4760 1.22123 3.73068
Slide 200078650040 PC3 t-test 1.39e-07 2.8108 1.62123 4.00044
Slide 200078650055 PC3 t-test 2.77e-05 2.1268 0.99426 3.25936
Slide 200078650088 PC3 t-test 1.40e-04 1.9332 0.79970 3.06668
Slide 200078650090 PC3 t-test 7.96e-10 3.2800 2.09198 4.46806
Slide 200090280005 PC3 t-test 1.83e-05 2.0817 0.99734 3.16610
Slide 200078650045 PC3 t-test 3.42e-11 3.2180 2.13805 4.29789
Slide 200078650152 PC3 t-test 4.51e-09 2.9774 1.84666 4.10804
Slide 200078650170 PC3 t-test 2.73e-04 1.7697 0.68382 2.85557
Slide 200078650173 PC3 t-test 2.74e-06 2.3781 1.24694 3.50934
Slide 200078650188 PC3 t-test 6.16e-04 1.8234 0.63400 3.01282
Slide 200078650210 PC3 t-test 1.30e-03 1.7127 0.52288 2.90259
Slide 200078650001 PC3 t-test 9.20e-17 5.3179 3.90012 6.73571
Slide 200078650118 PC3 t-test 1.08e-03 1.6596 0.52494 2.79427
Slide 200078650189 PC3 t-test 8.80e-05 1.9062 0.82092 2.99142
Slide 200090270021 PC3 t-test 6.59e-18 5.1668 3.83930 6.49422
Slide 200090280029 PC3 t-test 1.66e-06 2.4291 1.29815 3.55997
Slide 200090280040 PC3 t-test 6.74e-03 1.3184 0.23080 2.40603
Slide 200078650089 PC3 t-test 2.28e-03 1.6248 0.43460 2.81498
sentrix_col PC3 F-test 5.65e-04 11.9275
sentrix_col 1 PC3 t-test 3.46e-06 0.3856 0.20523 0.56595
sentrix_row PC3 F-test 5.74e-03 3.2962
sentrix_row 1 PC3 t-test 1.59e-04 0.3937 0.16246 0.62494
sentrix_row 2 PC3 t-test 8.69e-05 0.4283 0.18620 0.67049
Batch PC4 F-test 2.29e-09 36.0584
Batch 1 PC4 t-test 7.77e-17 -0.5547 -0.69852 -0.41097
Batch 2 PC4 t-test 2.41e-05 0.2809 0.13649 0.42533
Sample.Set PC4 F-test 4.42e-12 26.5100
Sample.Set George_Mellick PC4 t-test 4.91e-11 -0.6737 -0.88683 -0.46052
Sample.Set Ian Hickie PC4 t-test 2.86e-08 0.9653 0.57813 1.35246
Sample.Set Martin_Kennedy PC4 t-test 1.95e-04 0.3587 0.14463 0.57271
Slide PC4 F-test 2.06e-122 7.8597
Slide 3998888019 PC4 t-test 3.94e-03 -1.0917 -1.93801 -0.24530
Slide 3998888180 PC4 t-test 4.19e-03 1.0845 0.23809 1.93085
Slide 3998888008 PC4 t-test 1.37e-05 -1.6445 -2.48845 -0.80062
Slide 3998888022 PC4 t-test 5.91e-07 -1.9957 -2.88674 -1.10464
Slide 3998888024 PC4 t-test 8.63e-03 -0.9948 -1.84147 -0.14811
Slide 3998888042 PC4 t-test 5.24e-03 -1.0630 -1.91397 -0.21197
Slide 3998888045 PC4 t-test 5.05e-03 -1.1087 -1.99260 -0.22485
Slide 3998888059 PC4 t-test 2.43e-03 1.2571 0.33064 2.18353
Slide 3998888083 PC4 t-test 1.43e-03 1.2076 0.36165 2.05351
Slide 3998888087 PC4 t-test 4.72e-06 1.7304 0.88692 2.57381
Slide 3998888176 PC4 t-test 4.56e-06 1.7331 0.88965 2.57650
Slide 101103430091 PC4 t-test 8.38e-03 -1.0030 -1.85337 -0.15262
Slide 101103430120 PC4 t-test 2.13e-04 1.4634 0.58095 2.34588
Slide 101103430129 PC4 t-test 8.43e-07 1.8612 1.01852 2.70388
Slide 3998919138 PC4 t-test 8.63e-04 1.2612 0.41553 2.10696
Slide 100973270162 PC4 t-test 8.63e-04 1.2613 0.41559 2.10701
Slide 100973330047 PC4 t-test 1.51e-03 1.2011 0.35511 2.04701
Slide 101070190049 PC4 t-test 2.58e-03 -1.1414 -1.98758 -0.29522
Slide 100973270083 PC4 t-test 2.29e-04 -1.3979 -2.24504 -0.55067
Slide 100973270128 PC4 t-test 7.78e-15 -3.1051 -3.99181 -2.21846
Slide 100973270129 PC4 t-test 2.58e-07 -1.9528 -2.79774 -1.10777
Slide 100973270135 PC4 t-test 4.39e-03 -1.0788 -1.92524 -0.23244
Slide 100973270157 PC4 t-test 8.33e-04 -1.2650 -2.11065 -0.41926
Slide 100973270167 PC4 t-test 6.42e-05 -1.5788 -2.46074 -0.69689
Slide 100973330037 PC4 t-test 1.14e-04 -1.5339 -2.42159 -0.64618
Slide 100973330043 PC4 t-test 3.16e-15 -3.1708 -4.06293 -2.27859
Slide 100973330044 PC4 t-test 8.26e-16 -3.2105 -4.09497 -2.32607
Slide 100973330051 PC4 t-test 3.72e-03 -1.1009 -1.94908 -0.25278
Slide 101070190089 PC4 t-test 2.19e-09 -2.2730 -3.11881 -1.42717
Slide 101070190097 PC4 t-test 1.99e-03 -1.2817 -2.20802 -0.35532
Slide 101070190098 PC4 t-test 5.73e-04 -1.3036 -2.14914 -0.45807
Slide 101070190110 PC4 t-test 1.97e-03 -1.1717 -2.01776 -0.32563
Slide 101070190122 PC4 t-test 7.91e-04 -1.3299 -2.21523 -0.44464
Slide 101070190123 PC4 t-test 5.15e-04 -1.3145 -2.16001 -0.46902
Slide 101070190017 PC4 t-test 9.82e-04 -1.2617 -2.11703 -0.40643
Slide 101070190018 PC4 t-test 3.61e-05 -1.6439 -2.53217 -0.75559
Slide 101070190033 PC4 t-test 3.99e-07 -2.0218 -2.91103 -1.13264
Slide 101070190051 PC4 t-test 1.90e-03 -1.2357 -2.12462 -0.34672
Slide 101070190111 PC4 t-test 4.08e-04 -1.4649 -2.39054 -0.53932
Slide 100994770033 PC4 t-test 8.42e-04 1.3198 0.43670 2.20287
Slide 101070190038 PC4 t-test 3.73e-03 -1.2074 -2.13763 -0.27708
Slide 101070190088 PC4 t-test 7.61e-03 -1.0556 -1.93961 -0.17151
Slide 101070190121 PC4 t-test 4.23e-03 -1.0832 -1.92957 -0.23680
Slide 200078650161 PC4 t-test 2.45e-06 1.7812 0.93804 2.62435
Slide 200078650234 PC4 t-test 5.79e-05 1.5213 0.67676 2.36585
Slide 200078650003 PC4 t-test 9.57e-03 1.0248 0.14063 1.90893
Slide 200078650250 PC4 t-test 1.16e-05 1.6584 0.81459 2.50227
Slide 200078650040 PC4 t-test 5.26e-03 -1.1666 -2.10095 -0.23235
Slide 200090270100 PC4 t-test 5.08e-03 1.0613 0.21479 1.90772
Slide 200078650152 PC4 t-test 1.17e-06 1.9180 1.03794 2.79811
Slide 200078650170 PC4 t-test 3.40e-05 1.5678 0.72354 2.41216
Slide 200078650173 PC4 t-test 2.74e-03 1.1867 0.30139 2.07202
Slide 200078650001 PC4 t-test 6.82e-08 2.6697 1.56700 3.77238
Slide 200090270021 PC4 t-test 7.38e-11 3.0035 1.97758 4.02945
Slide 200090280040 PC4 t-test 3.98e-04 1.3404 0.49501 2.18577
Slide 200090280042 PC4 t-test 4.58e-05 1.5419 0.69746 2.38634
Slide 200078650109 PC4 t-test 1.20e-03 -1.2856 -2.17241 -0.39870
Slide 200078650240 PC4 t-test 7.75e-03 1.0087 0.16202 1.85530
sentrix_col 1 PC4 t-test 3.39e-03 -0.1996 -0.34767 -0.05147
sentrix_row PC4 F-test 1.30e-27 28.1711
sentrix_row 1 PC4 t-test 5.61e-08 0.4420 0.26188 0.62209
sentrix_row 2 PC4 t-test 1.45e-03 0.2727 0.08263 0.46268
sentrix_row 5 PC4 t-test 1.54e-14 -0.6474 -0.83311 -0.46174
sentrix_row 6 PC4 t-test 2.09e-26 -0.8796 -1.06058 -0.69865
Batch PC5 F-test 3.51e-06 21.6459
Batch 1 PC5 t-test 3.49e-04 -0.1537 -0.24726 -0.06013
Batch 2 PC5 t-test 2.38e-07 0.2268 0.13157 0.32210
Slide PC5 F-test 1.38e-43 3.7412
Slide 3998888072 PC5 t-test 3.19e-03 -0.7820 -1.37459 -0.18938
Slide 3998888045 PC5 t-test 8.85e-04 -0.9203 -1.53875 -0.30193
Slide 3998888059 PC5 t-test 1.94e-04 1.0834 0.43424 1.73264
Slide 101103430120 PC5 t-test 1.91e-03 0.8592 0.24058 1.47787
Slide 3998888017 PC5 t-test 8.84e-03 -0.7252 -1.34429 -0.10608
Slide 3998888065 PC5 t-test 4.11e-03 -0.7610 -1.35364 -0.16828
Slide 3998919043 PC5 t-test 6.09e-04 0.9124 0.31781 1.50707
Slide 3998919138 PC5 t-test 6.99e-03 0.7154 0.12257 1.30823
Slide 100973270155 PC5 t-test 2.21e-03 -0.8883 -1.53705 -0.23959
Slide 100973270162 PC5 t-test 6.92e-03 -0.7164 -1.30918 -0.12353
Slide 100973270083 PC5 t-test 6.84e-03 -0.7173 -1.31011 -0.12446
Slide 100973270135 PC5 t-test 1.95e-04 0.9873 0.39551 1.57908
Slide 100973330003 PC5 t-test 5.91e-04 -0.9107 -1.50277 -0.31855
Slide 101070190123 PC5 t-test 5.86e-03 0.7309 0.13810 1.32366
Slide 101070190051 PC5 t-test 1.13e-03 -0.9016 -1.52011 -0.28314
Slide 101070190111 PC5 t-test 8.57e-03 -0.7634 -1.41260 -0.11429
Slide 101070190071 PC5 t-test 4.45e-03 -0.7543 -1.34701 -0.16161
Slide 101070190121 PC5 t-test 1.10e-04 1.0247 0.43304 1.61626
Slide 101130760008 PC5 t-test 8.52e-03 -0.6978 -1.29067 -0.10490
Slide 200078650097 PC5 t-test 6.72e-03 0.7188 0.12603 1.31167
Slide 200078650115 PC5 t-test 3.24e-04 0.9950 0.37687 1.61307
Slide 200078650136 PC5 t-test 1.03e-04 1.0794 0.45892 1.69993
Slide 200078650250 PC5 t-test 3.79e-06 -1.2237 -1.81430 -0.63310
Slide 200078650021 PC5 t-test 6.04e-04 1.0511 0.36645 1.73569
Slide 200078650055 PC5 t-test 8.88e-03 0.7265 0.10583 1.34715
Slide 200078650110 PC5 t-test 4.69e-03 -0.7500 -1.34267 -0.15723
Slide 200078650111 PC5 t-test 8.12e-04 -0.8877 -1.47988 -0.29547
Slide 200090280019 PC5 t-test 6.55e-03 0.7211 0.12830 1.31393
Slide 200078650045 PC5 t-test 7.75e-04 0.8911 0.29896 1.48334
Slide 200078650210 PC5 t-test 6.74e-03 -0.7868 -1.43584 -0.13769
Slide 200078650226 PC5 t-test 4.19e-03 0.7593 0.16665 1.35202
Slide 200090270021 PC5 t-test 7.19e-03 -0.8722 -1.59757 -0.14686
Slide 200078650051 PC5 t-test 4.10e-04 0.9825 0.36143 1.60361
Slide 200078650129 PC5 t-test 8.42e-03 0.7297 0.11062 1.34881
sentrix_row 5 PC5 t-test 6.94e-03 0.1542 0.02741 0.28090
Sex PC5 F-test 4.27e-03 8.1851
Sex F PC5 t-test 1.74e-04 0.1636 0.06845 0.25874
Slide PC6 F-test 1.99e-13 2.1115
Slide 3998888022 PC6 t-test 2.03e-04 0.7936 0.31659 1.27065
Slide 3998888023 PC6 t-test 4.87e-03 -0.6054 -1.08589 -0.12485
Slide 100973270162 PC6 t-test 7.48e-03 0.5511 0.09054 1.01157
Slide 100973330047 PC6 t-test 5.91e-06 -0.9339 -1.39387 -0.47394
Slide 100973330054 PC6 t-test 4.32e-03 0.6114 0.13258 1.09017
Slide 100973330082 PC6 t-test 8.97e-04 0.6797 0.22252 1.13692
Slide 101070190063 PC6 t-test 6.78e-03 -0.6070 -1.10809 -0.10589
Slide 100973270083 PC6 t-test 4.21e-04 -0.7253 -1.18458 -0.26595
Slide 100973270157 PC6 t-test 3.80e-03 -0.5926 -1.05015 -0.13506
Slide 101070190148 PC6 t-test 7.71e-03 -0.5456 -1.00332 -0.08790
Slide 100994770033 PC6 t-test 9.61e-06 0.9557 0.47390 1.43751
Slide 101070190071 PC6 t-test 8.61e-03 0.5392 0.08046 0.99794
Slide 101070190161 PC6 t-test 7.25e-04 0.6917 0.23456 1.14885
Slide 101103430112 PC6 t-test 3.35e-03 0.6007 0.14314 1.05817
Slide 101103430118 PC6 t-test 3.69e-04 0.7302 0.27223 1.18810
Slide 200078650086 PC6 t-test 1.08e-06 -1.0422 -1.51869 -0.56561
Slide 200078650115 PC6 t-test 4.19e-03 0.6122 0.13446 1.09003
Slide 200090280007 PC6 t-test 4.46e-04 -0.8327 -1.36238 -0.30295
Slide 200090280019 PC6 t-test 3.66e-04 0.7292 0.27222 1.18619
Slide 200078650152 PC6 t-test 2.58e-03 -0.6494 -1.13094 -0.16783
Slide 200078650206 PC6 t-test 5.38e-03 -0.6002 -1.08208 -0.11827
Slide 200078650231 PC6 t-test 5.95e-04 -0.7378 -1.21767 -0.25788
Slide 200078650041 PC6 t-test 2.27e-03 0.6561 0.17591 1.13625
Slide 200078650109 PC6 t-test 3.87e-04 -0.7582 -1.23541 -0.28103
Slide 200078650224 PC6 t-test 2.60e-03 -0.6188 -1.07782 -0.15972
Slide PC7 F-test 5.37e-71 5.1328
Slide 3998888072 PC7 t-test 8.91e-03 -0.5490 -1.01808 -0.07983
Slide 3998888170 PC7 t-test 2.24e-05 -0.8885 -1.35618 -0.42077
Slide 3998888008 PC7 t-test 6.42e-05 -0.8378 -1.30572 -0.36980
Slide 3998888022 PC7 t-test 1.35e-07 -1.1541 -1.64207 -0.66615
Slide 3998888024 PC7 t-test 1.61e-03 -0.6616 -1.13030 -0.19284
Slide 3998888041 PC7 t-test 5.06e-04 -0.7615 -1.25069 -0.27237
Slide 3998888017 PC7 t-test 1.36e-06 -1.0561 -1.54381 -0.56848
Slide 3998888023 PC7 t-test 3.68e-07 -1.1162 -1.60555 -0.62679
Slide 3998888065 PC7 t-test 2.17e-05 -0.8900 -1.35771 -0.42231
Slide 3998888069 PC7 t-test 3.78e-03 -0.6077 -1.07665 -0.13879
Slide 3998919043 PC7 t-test 2.80e-03 -0.6271 -1.09594 -0.15822
Slide 3998919058 PC7 t-test 9.13e-03 -0.5713 -1.06122 -0.08148
Slide 3998919138 PC7 t-test 2.93e-04 -0.7595 -1.22778 -0.29113
Slide 3998920007 PC7 t-test 5.39e-03 -0.5839 -1.05295 -0.11493
Slide 100973270083 PC7 t-test 5.62e-04 0.7235 0.25500 1.19196
Slide 100973270094 PC7 t-test 7.12e-05 0.8695 0.38079 1.35813
Slide 100973270100 PC7 t-test 6.24e-05 0.8392 0.37124 1.30715
Slide 100973270129 PC7 t-test 1.98e-04 0.7803 0.31211 1.24857
Slide 100973270135 PC7 t-test 5.70e-08 1.1436 0.67409 1.61308
Slide 100973270157 PC7 t-test 4.17e-03 0.6013 0.13230 1.07020
Slide 100973270167 PC7 t-test 2.50e-03 0.6638 0.17325 1.15439
Slide 100973330003 PC7 t-test 1.27e-05 0.9146 0.44706 1.38219
Slide 100973330037 PC7 t-test 5.90e-05 0.8850 0.39312 1.37684
Slide 100973330044 PC7 t-test 2.38e-03 0.6674 0.17650 1.15836
Slide 100973330048 PC7 t-test 7.03e-03 0.5657 0.09659 1.03473
Slide 100973330051 PC7 t-test 7.96e-04 0.7047 0.23535 1.17406
Slide 101070190089 PC7 t-test 9.49e-03 0.5444 0.07525 1.01353
Slide 101070190097 PC7 t-test 6.90e-03 0.6208 0.10718 1.13434
Slide 101070190098 PC7 t-test 3.79e-03 0.6075 0.13860 1.07646
Slide 101070190099 PC7 t-test 8.37e-03 0.5550 0.08452 1.02544
Slide 101070190110 PC7 t-test 2.57e-03 0.6327 0.16385 1.10152
Slide 101070190122 PC7 t-test 3.50e-04 0.7828 0.29375 1.27189
Slide 101070190123 PC7 t-test 1.36e-07 1.1101 0.64066 1.57944
Slide 101070190148 PC7 t-test 9.78e-04 0.6915 0.22290 1.16012
Slide 101070190017 PC7 t-test 5.41e-04 -0.7287 -1.19916 -0.25824
Slide 101070190018 PC7 t-test 2.63e-03 -0.6614 -1.15283 -0.17006
Slide 101070190051 PC7 t-test 8.19e-03 -0.5813 -1.07280 -0.08988
Slide 100994770033 PC7 t-test 1.50e-10 -1.4048 -1.89273 -0.91678
Slide 101103430112 PC7 t-test 4.41e-03 -0.6004 -1.07167 -0.12907
Slide 101103430114 PC7 t-test 5.27e-03 -0.6422 -1.15676 -0.12772
Slide 200078650003 PC7 t-test 5.01e-04 -0.7622 -1.25135 -0.27303
Slide 200078650115 PC7 t-test 4.81e-04 0.7645 0.27538 1.25368
Slide 200078650111 PC7 t-test 1.83e-03 0.6538 0.18503 1.12255
Slide 200090270100 PC7 t-test 2.18e-03 0.6430 0.17424 1.11184
Slide 200090280005 PC7 t-test 7.59e-05 0.8324 0.36276 1.30212
Slide 200090280007 PC7 t-test 6.56e-03 0.6600 0.11735 1.20267
Slide 200090280019 PC7 t-test 1.94e-03 0.6501 0.18130 1.11885
Slide 200090270021 PC7 t-test 6.20e-06 -1.1608 -1.73384 -0.58770
Sex PC7 F-test 5.22e-05 16.4411
Sex M PC7 t-test 2.13e-04 0.1342 0.05569 0.21263
Sex F PC7 t-test 1.52e-04 -0.1361 -0.21456 -0.05768
AGE_all PC7 F-test 7.57e-03 7.1468
Batch PC8 F-test 7.22e-61 291.3590
Batch 1 PC8 t-test 3.93e-62 -0.5243 -0.59053 -0.45804
Batch 2 PC8 t-test 1.65e-52 0.4559 0.39288 0.51897
Sample.Set PC8 F-test 1.46e-04 8.8759
Sample.Set Ian Hickie PC8 t-test 2.95e-05 0.3632 0.16932 0.55705
Slide PC8 F-test 4.51e-182 11.3995
Slide 3998888019 PC8 t-test 6.78e-10 -1.1614 -1.58031 -0.74250
Slide 3998888067 PC8 t-test 3.32e-06 -0.9159 -1.35522 -0.47648
Slide 3998888072 PC8 t-test 1.66e-05 -0.8126 -1.23374 -0.39150
Slide 3998888109 PC8 t-test 6.98e-07 -0.9769 -1.41589 -0.53786
Slide 3998888008 PC8 t-test 8.23e-08 -1.0146 -1.43636 -0.59291
Slide 3998888022 PC8 t-test 3.73e-05 -0.8127 -1.25263 -0.37279
Slide 3998888024 PC8 t-test 3.08e-06 -0.8816 -1.30310 -0.46003
Slide 3998888041 PC8 t-test 6.31e-04 -0.6754 -1.11687 -0.23401
Slide 3998888042 PC8 t-test 7.17e-18 -1.6414 -2.06359 -1.21925
Slide 3998888045 PC8 t-test 1.95e-07 -1.0326 -1.47491 -0.59021
Slide 3998888068 PC8 t-test 1.23e-06 -0.9163 -1.33768 -0.49499
Slide 3998888071 PC8 t-test 1.80e-03 -0.6156 -1.05641 -0.17485
Slide 3998888080 PC8 t-test 2.29e-09 -1.1320 -1.55381 -0.71021
Slide 3998888081 PC8 t-test 7.79e-08 -1.0199 -1.44301 -0.59677
Slide 3998888083 PC8 t-test 5.69e-20 -1.7396 -2.16024 -1.31906
Slide 3998888086 PC8 t-test 2.11e-11 -1.3151 -1.75169 -0.87845
Slide 3998888087 PC8 t-test 3.46e-03 -0.5535 -0.97652 -0.13044
Slide 3998888017 PC8 t-test 1.15e-08 -1.1261 -1.56573 -0.68653
Slide 3998888023 PC8 t-test 6.25e-06 -0.8899 -1.32945 -0.45042
Slide 3998888065 PC8 t-test 5.60e-04 -0.6540 -1.07740 -0.23059
Slide 3998888069 PC8 t-test 7.22e-08 -1.0174 -1.43847 -0.59642
Slide 3998919138 PC8 t-test 1.79e-03 -0.5899 -1.01205 -0.16781
Slide 101070190070 PC8 t-test 1.66e-09 -1.1401 -1.56126 -0.71901
Slide 100973270085 PC8 t-test 7.88e-03 0.5243 0.08323 0.96544
Slide 100973330037 PC8 t-test 4.07e-03 -0.5668 -1.00781 -0.12589
Slide 100994770033 PC8 t-test 9.48e-06 -0.8725 -1.31209 -0.43287
Slide 101130760008 PC8 t-test 1.01e-03 0.6210 0.19903 1.04303
Slide 101103430118 PC8 t-test 1.83e-03 0.5887 0.16658 1.01084
Slide 200078650218 PC8 t-test 6.71e-03 0.5349 0.09387 0.97601
Slide 200078650003 PC8 t-test 4.03e-03 -0.5674 -1.00837 -0.12645
Slide 200078650192 PC8 t-test 3.52e-04 0.7047 0.26425 1.14510
Slide 200078650250 PC8 t-test 2.29e-09 1.1275 0.70744 1.54765
Slide 200078650021 PC8 t-test 1.50e-04 -0.8309 -1.32031 -0.34146
Slide 200078650111 PC8 t-test 1.97e-04 0.7029 0.28121 1.12452
Slide 200090280019 PC8 t-test 2.45e-03 0.5724 0.15018 0.99455
Slide 200078650152 PC8 t-test 1.85e-05 -0.8438 -1.28356 -0.40404
Slide 200078650188 PC8 t-test 2.68e-08 1.1470 0.68748 1.60657
Slide 200078650206 PC8 t-test 3.50e-05 0.8155 0.37564 1.25545
Slide 200078650226 PC8 t-test 6.65e-03 0.5128 0.09043 0.93522
Slide 200078650255 PC8 t-test 8.32e-04 0.6591 0.21853 1.09976
Slide 200078650261 PC8 t-test 7.91e-05 0.7451 0.32362 1.16654
Slide 200078650001 PC8 t-test 1.52e-03 -0.7830 -1.33498 -0.23108
Slide 200078650041 PC8 t-test 6.66e-04 0.6726 0.23108 1.11408
Slide 200078650187 PC8 t-test 9.27e-04 0.6532 0.21254 1.09381
Slide 200078650224 PC8 t-test 5.73e-03 0.5221 0.09977 0.94450
Slide 200078650237 PC8 t-test 1.00e-05 0.8721 0.43149 1.31281
Slide 200078650240 PC8 t-test 2.68e-03 0.5673 0.14505 0.98947
sentrix_row PC8 F-test 2.71e-34 34.9656
sentrix_row 1 PC8 t-test 3.42e-28 -0.4410 -0.52855 -0.35344
sentrix_row 2 PC8 t-test 1.15e-13 -0.3127 -0.40566 -0.21974
sentrix_row 4 PC8 t-test 5.68e-03 0.1146 0.02259 0.20655
sentrix_row 5 PC8 t-test 1.17e-04 0.1557 0.06610 0.24525
sentrix_row 6 PC8 t-test 3.01e-09 0.2410 0.15117 0.33089
Sex PC8 F-test 4.26e-03 8.1892
Sex M PC8 t-test 2.45e-04 -0.1180 -0.18772 -0.04830
Batch PC9 F-test 5.61e-06 20.7346
Batch 1 PC9 t-test 6.33e-05 0.1112 0.05072 0.17172
Batch 2 PC9 t-test 2.66e-07 -0.1463 -0.20796 -0.08461
Sample.Set Martin_Kennedy PC9 t-test 2.52e-03 -0.1292 -0.22440 -0.03403
Slide PC9 F-test 1.90e-27 2.9043
Slide 3998888109 PC9 t-test 1.57e-03 -0.5562 -0.94914 -0.16320
Slide 3998888180 PC9 t-test 7.53e-03 -0.4493 -0.82517 -0.07351
Slide 3998888024 PC9 t-test 5.32e-04 0.5821 0.20674 0.95741
Slide 101070190002 PC9 t-test 2.45e-03 0.5093 0.13364 0.88488
Slide 101103430092 PC9 t-test 1.37e-04 0.6690 0.27733 1.06065
Slide 100973270154 PC9 t-test 4.63e-08 0.9189 0.54419 1.29353
Slide 100973270155 PC9 t-test 5.87e-04 0.6324 0.22141 1.04337
Slide 100973270162 PC9 t-test 8.25e-07 0.8269 0.45282 1.20101
Slide 100973330047 PC9 t-test 2.62e-04 0.6149 0.23869 0.99103
Slide 100973330054 PC9 t-test 3.91e-04 0.6222 0.23031 1.01404
Slide 101070190070 PC9 t-test 2.95e-03 -0.4998 -0.87542 -0.12410
Slide 101130760005 PC9 t-test 4.87e-04 -0.5861 -0.96138 -0.21074
Slide 101070190122 PC9 t-test 4.17e-03 -0.5029 -0.89524 -0.11058
Slide 101070190051 PC9 t-test 1.65e-03 -0.5522 -0.94431 -0.16001
Slide 101070190109 PC9 t-test 1.28e-05 -0.7672 -1.15947 -0.37486
Slide 100994770033 PC9 t-test 6.25e-03 -0.4801 -0.87251 -0.08769
Slide 101130760008 PC9 t-test 2.97e-03 -0.5017 -0.87914 -0.12434
Slide 101103430114 PC9 t-test 9.34e-03 -0.4807 -0.89411 -0.06730
Slide 200078650192 PC9 t-test 5.35e-03 -0.4899 -0.88307 -0.09678
Slide 200090270152 PC9 t-test 8.28e-03 -0.4861 -0.89760 -0.07457
Slide 200090280005 PC9 t-test 2.50e-03 -0.5109 -0.88848 -0.13326
Slide 200078650170 PC9 t-test 2.60e-06 0.7910 0.41559 1.16643
Slide 200090270021 PC9 t-test 3.71e-05 0.8504 0.39015 1.31069
Slide 200078650258 PC9 t-test 6.36e-03 -0.4811 -0.87517 -0.08703
sentrix_row PC9 F-test 8.85e-04 4.1790
sentrix_row 6 PC9 t-test 4.70e-05 -0.1482 -0.22890 -0.06748
Sex F PC9 t-test 7.79e-03 -0.0756 -0.13768 -0.01353
Batch PC10 F-test 4.27e-14 57.9233
Batch 1 PC10 t-test 1.69e-14 -0.2001 -0.25657 -0.14368
Batch 2 PC10 t-test 1.84e-10 0.1554 0.10263 0.20814
Sample.Set PC10 F-test 4.04e-07 14.8373
Sample.Set George_Mellick PC10 t-test 4.84e-05 0.1547 0.07525 0.23414
Sample.Set Martin_Kennedy PC10 t-test 3.80e-11 -0.2522 -0.33672 -0.16775
Slide PC10 F-test 2.92e-38 3.4688
Slide 3998888022 PC10 t-test 8.09e-05 0.6166 0.26734 0.96589
Slide 3998888042 PC10 t-test 2.17e-03 -0.4612 -0.79722 -0.12510
Slide 3998888068 PC10 t-test 2.09e-04 -0.5594 -0.89634 -0.22250
Slide 3998888071 PC10 t-test 3.71e-05 -0.6463 -0.99607 -0.29656
Slide 3998888081 PC10 t-test 4.67e-03 -0.4251 -0.76102 -0.08926
Slide 3998888083 PC10 t-test 2.72e-04 -0.5456 -0.88031 -0.21091
Slide 3998888086 PC10 t-test 2.12e-06 -0.7410 -1.08964 -0.39241
Slide 3998888087 PC10 t-test 6.02e-03 -0.4120 -0.74717 -0.07674
Slide 3998888176 PC10 t-test 1.24e-06 -0.7295 -1.06503 -0.39399
Slide 101103430092 PC10 t-test 1.96e-03 -0.4856 -0.83611 -0.13517
Slide 3998888023 PC10 t-test 7.79e-04 0.5288 0.17725 0.88038
Slide 101070190150 PC10 t-test 4.21e-03 -0.4301 -0.76606 -0.09424
Slide 100973270085 PC10 t-test 1.53e-04 -0.5969 -0.94883 -0.24489
Slide 100973270128 PC10 t-test 4.80e-03 -0.4430 -0.79410 -0.09193
Slide 100973270135 PC10 t-test 1.76e-04 -0.5686 -0.90705 -0.23009
Slide 100973270157 PC10 t-test 3.10e-03 -0.4472 -0.78504 -0.10935
Slide 100973330003 PC10 t-test 5.99e-05 -0.6026 -0.93776 -0.26738
Slide 101070190122 PC10 t-test 6.24e-03 -0.4294 -0.78030 -0.07843
Slide 101070190111 PC10 t-test 9.86e-03 0.4238 0.05673 0.79096
Slide 101070190115 PC10 t-test 5.89e-03 0.4522 0.08518 0.81923
Slide 101130760004 PC10 t-test 5.04e-04 0.5214 0.18659 0.85620
Slide 101070190071 PC10 t-test 7.97e-04 0.5028 0.16788 0.83764
Slide 101070190121 PC10 t-test 3.88e-04 0.5326 0.19734 0.86793
Slide 101070190161 PC10 t-test 4.87e-03 0.4223 0.08707 0.75744
Slide 200078650021 PC10 t-test 4.37e-03 0.4942 0.10664 0.88167
Slide 200078650170 PC10 t-test 9.92e-03 0.3868 0.05151 0.72211
Slide 200078650188 PC10 t-test 3.70e-04 -0.5843 -0.95077 -0.21774
Slide 200078650194 PC10 t-test 1.41e-03 0.5242 0.15744 0.89096
Slide 200078650159 PC10 t-test 1.22e-04 0.6010 0.25169 0.95039
Sex PC10 F-test 4.26e-06 21.2665
Sex M PC10 t-test 6.74e-04 0.0864 0.03134 0.14137
Sex F PC10 t-test 1.45e-07 -0.1346 -0.19041 -0.07885
Slide PC11 F-test 7.98e-59 4.5139
Slide 3998888067 PC11 t-test 7.19e-03 0.4253 0.07161 0.77907
Slide 3998888008 PC11 t-test 5.31e-03 0.4232 0.08388 0.76260
Slide 3998888022 PC11 t-test 3.46e-03 0.4625 0.10894 0.81615
Slide 3998888041 PC11 t-test 3.54e-03 0.4615 0.10788 0.81509
Slide 3998888068 PC11 t-test 2.02e-06 0.7186 0.38121 1.05594
Slide 3998888071 PC11 t-test 5.19e-03 0.4423 0.08859 0.79594
Slide 101070190050 PC11 t-test 5.43e-03 0.4223 0.08279 0.76174
Slide 100973270154 PC11 t-test 3.04e-04 0.5498 0.20981 0.88977
Slide 100973270155 PC11 t-test 1.79e-03 0.5179 0.14726 0.88856
Slide 100973270162 PC11 t-test 5.21e-05 0.6124 0.27450 0.95036
Slide 100973270085 PC11 t-test 7.27e-03 0.4255 0.07116 0.77987
Slide 100973270167 PC11 t-test 3.62e-03 0.4612 0.10696 0.81541
Slide 101070190099 PC11 t-test 7.36e-04 -0.5114 -0.84974 -0.17298
Slide 101070190123 PC11 t-test 9.14e-04 -0.5032 -0.84223 -0.16415
Slide 101070190148 PC11 t-test 2.75e-06 -0.7128 -1.05202 -0.37367
Slide 101070190017 PC11 t-test 9.86e-03 0.3911 0.05234 0.72995
Slide 101070190111 PC11 t-test 1.72e-04 -0.6229 -0.99310 -0.25266
Slide 101130760004 PC11 t-test 3.42e-06 -0.7025 -1.03995 -0.36503
Slide 100994770033 PC11 t-test 1.20e-14 -1.2282 -1.58153 -0.87491
Slide 101070190121 PC11 t-test 4.28e-03 -0.4329 -0.77156 -0.09422
Slide 101103430113 PC11 t-test 7.06e-03 0.4263 0.07258 0.78004
Slide 200078650250 PC11 t-test 7.25e-05 0.6031 0.26377 0.94249
Slide 200078650110 PC11 t-test 1.72e-03 -0.4748 -0.81336 -0.13633
Slide 200090270100 PC11 t-test 1.08e-05 -0.6660 -1.00363 -0.32832
Slide 200090280007 PC11 t-test 9.70e-03 -0.4523 -0.84321 -0.06136
Slide 200090280009 PC11 t-test 2.79e-03 -0.4961 -0.86681 -0.12535
Slide 200090280019 PC11 t-test 1.30e-03 -0.4873 -0.82575 -0.14881
Slide 200078650045 PC11 t-test 1.64e-08 0.8530 0.51644 1.18949
Slide 200078650188 PC11 t-test 7.55e-07 0.8207 0.45073 1.19074
Slide 200078650001 PC11 t-test 4.99e-03 -0.5563 -0.99926 -0.11344
Slide 200078650189 PC11 t-test 4.45e-05 0.6180 0.28005 0.95585
Slide 200078650109 PC11 t-test 5.01e-03 -0.4441 -0.79780 -0.09046
Batch 2 PC12 t-test 6.04e-03 0.0555 0.01157 0.09939
Slide PC12 F-test 6.14e-11 1.9535
Slide 3998888019 PC12 t-test 1.15e-04 -0.4609 -0.72771 -0.19400
Slide 3998888008 PC12 t-test 2.35e-04 -0.4385 -0.70479 -0.17224
Slide 3998888083 PC12 t-test 4.67e-03 -0.3379 -0.60485 -0.07098
Slide 3998888086 PC12 t-test 6.98e-04 -0.4228 -0.70131 -0.14421
Slide 101070190016 PC12 t-test 8.02e-08 -0.6706 -0.94913 -0.39216
Slide 101070190050 PC12 t-test 2.07e-04 -0.4443 -0.71166 -0.17685
Slide 101103430120 PC12 t-test 2.59e-04 -0.4550 -0.73317 -0.17684
Slide 100973270155 PC12 t-test 1.34e-03 0.4184 0.12686 0.71002
Slide 101070190062 PC12 t-test 5.96e-03 0.3273 0.06129 0.59323
Slide 101070190070 PC12 t-test 1.21e-06 0.5851 0.31633 0.85391
Slide 100973270100 PC12 t-test 4.00e-04 0.4249 0.15682 0.69292
Slide 101070190097 PC12 t-test 1.50e-03 0.4184 0.12394 0.71279
Slide 101070190099 PC12 t-test 2.08e-06 0.5717 0.30301 0.84046
Slide 101070190123 PC12 t-test 7.38e-04 0.4049 0.13692 0.67287
Slide 101070190148 PC12 t-test 1.80e-03 0.3756 0.10676 0.64438
Slide 101070190018 PC12 t-test 6.97e-03 0.3359 0.05764 0.61413
Slide 200078650194 PC12 t-test 3.01e-03 0.3871 0.09549 0.67868
Slide 200078650261 PC12 t-test 4.03e-03 0.3422 0.07624 0.60807
Sex F PC12 t-test 6.66e-03 0.0572 0.01117 0.10327
Batch PC13 F-test 2.02e-11 45.5070
Batch 1 PC13 t-test 2.03e-10 -0.1285 -0.17229 -0.08464
Batch 2 PC13 t-test 3.52e-11 0.1298 0.08740 0.17224
Slide PC13 F-test 1.87e-43 3.7345
Slide 3998888171 PC13 t-test 4.73e-04 0.4373 0.15785 0.71670
Slide 3998888008 PC13 t-test 1.48e-06 -0.5792 -0.84756 -0.31081
Slide 3998888022 PC13 t-test 9.39e-04 -0.4139 -0.69343 -0.13438
Slide 3998888059 PC13 t-test 8.76e-03 -0.3441 -0.63750 -0.05067
Slide 3998888061 PC13 t-test 1.07e-03 -0.3921 -0.65978 -0.12436
Slide 3998888071 PC13 t-test 7.16e-04 0.4246 0.14424 0.70487
Slide 3998920007 PC13 t-test 1.13e-06 -0.5822 -0.84899 -0.31545
Slide 100973270154 PC13 t-test 1.94e-05 -0.5125 -0.78029 -0.24473
Slide 100973330047 PC13 t-test 2.58e-08 -0.6666 -0.93330 -0.39982
Slide 100973270094 PC13 t-test 2.75e-03 -0.3748 -0.65444 -0.09509
Slide 100973270100 PC13 t-test 3.78e-08 -0.6604 -0.92797 -0.39291
Slide 100973270157 PC13 t-test 5.03e-05 0.4870 0.21884 0.75520
Slide 101070190109 PC13 t-test 5.06e-03 -0.3509 -0.63064 -0.07113
Slide 100994770033 PC13 t-test 8.69e-09 0.7211 0.44200 1.00026
Slide 200078650097 PC13 t-test 1.71e-03 0.3760 0.10818 0.64372
Slide 200090270100 PC13 t-test 9.42e-03 0.3113 0.04328 0.57926
Slide 200090270158 PC13 t-test 7.15e-03 0.3225 0.05451 0.59043
Slide 200090280007 PC13 t-test 7.19e-05 0.5503 0.24078 0.85974
Slide 200090280009 PC13 t-test 3.92e-05 0.5391 0.24645 0.83169
Slide 200078650152 PC13 t-test 4.09e-05 -0.5129 -0.79195 -0.23379
Slide 200078650193 PC13 t-test 8.90e-03 0.3275 0.04763 0.60730
Slide 200078650194 PC13 t-test 2.65e-04 0.4783 0.18537 0.77118
Slide 200078650001 PC13 t-test 7.37e-04 0.5300 0.17923 0.88086
sentrix_row PC13 F-test 3.34e-03 3.5546
sentrix_row 1 PC13 t-test 4.17e-04 -0.0907 -0.14764 -0.03367
Sex PC13 F-test 5.84e-04 11.8655
Sex M PC13 t-test 1.25e-03 -0.0655 -0.10945 -0.02150
Sex F PC13 t-test 6.77e-04 0.0676 0.02415 0.11095
Batch PC14 F-test 8.43e-04 11.1799
Batch 1 PC14 t-test 6.94e-04 0.0639 0.02288 0.10491
Batch 2 PC14 t-test 7.61e-03 -0.0506 -0.09182 -0.00936
Slide PC14 F-test 1.21e-30 3.0735
Slide 3998888008 PC14 t-test 1.92e-05 -0.4822 -0.73392 -0.23042
Slide 3998888041 PC14 t-test 8.99e-03 -0.3088 -0.57296 -0.04455
Slide 3998888061 PC14 t-test 6.84e-03 -0.3055 -0.55804 -0.05305
Slide 3998888068 PC14 t-test 6.94e-03 0.3061 0.05266 0.55956
Slide 3998888071 PC14 t-test 2.68e-03 0.3541 0.09053 0.61760
Slide 101070190062 PC14 t-test 3.62e-03 0.3286 0.07622 0.58106
Slide 100973270083 PC14 t-test 4.66e-06 0.5208 0.26710 0.77457
Slide 100973270085 PC14 t-test 1.89e-03 0.3672 0.10318 0.63129
Slide 100973270089 PC14 t-test 2.59e-03 0.3553 0.09172 0.61878
Slide 100973270094 PC14 t-test 6.14e-03 0.3232 0.05958 0.58687
Slide 100973270100 PC14 t-test 1.39e-07 0.5945 0.34291 0.84614
Slide 100973270128 PC14 t-test 8.32e-04 0.3940 0.13061 0.65737
Slide 101070190122 PC14 t-test 3.34e-03 0.3461 0.08250 0.60963
Slide 101070190018 PC14 t-test 5.16e-03 0.3307 0.06645 0.59488
Slide 100994770033 PC14 t-test 4.21e-07 -0.5990 -0.86303 -0.33503
Slide 101070190038 PC14 t-test 7.76e-03 0.3293 0.05284 0.60579
Slide 101103430112 PC14 t-test 1.69e-04 0.4263 0.17318 0.67938
Slide 101103430113 PC14 t-test 5.01e-03 0.3310 0.06737 0.59460
Slide 200078650003 PC14 t-test 8.56e-03 -0.3102 -0.57384 -0.04647
Slide 200090280007 PC14 t-test 2.37e-03 -0.3982 -0.69088 -0.10547
Slide 200090270021 PC14 t-test 3.50e-06 -0.6399 -0.94764 -0.33214
Slide 200078650041 PC14 t-test 2.48e-03 -0.3568 -0.62030 -0.09324
Slide 200078650051 PC14 t-test 1.97e-08 -0.6627 -0.92565 -0.39976
Slide 200078650109 PC14 t-test 4.37e-03 -0.3362 -0.59979 -0.07260
Slide 200078650112 PC14 t-test 9.83e-03 -0.3193 -0.59583 -0.04283
Slide 200078650187 PC14 t-test 4.80e-03 -0.3333 -0.59747 -0.06915
Slide PC15 F-test 5.56e-35 3.2997
Slide 3998888170 PC15 t-test 3.83e-04 0.3966 0.14717 0.64610
Slide 3998888171 PC15 t-test 9.99e-03 0.2999 0.03967 0.56003
Slide 3998888008 PC15 t-test 5.40e-03 -0.3100 -0.55914 -0.06095
Slide 3998888042 PC15 t-test 6.00e-03 -0.3071 -0.55680 -0.05731
Slide 101070190016 PC15 t-test 8.44e-03 0.3065 0.04639 0.56671
Slide 101103430091 PC15 t-test 1.69e-04 0.4188 0.17010 0.66743
Slide 101103430092 PC15 t-test 1.98e-05 0.4985 0.23777 0.75914
Slide 3998919058 PC15 t-test 1.79e-03 -0.3634 -0.62336 -0.10343
Slide 100973330047 PC15 t-test 5.79e-03 -0.3084 -0.55813 -0.05860
Slide 100973330082 PC15 t-test 6.13e-03 -0.3055 -0.55459 -0.05638
Slide 100973270083 PC15 t-test 5.70e-03 -0.3101 -0.56079 -0.05938
Slide 100973270128 PC15 t-test 4.37e-04 -0.4090 -0.66877 -0.14921
Slide 100973330037 PC15 t-test 6.05e-03 0.3194 0.05932 0.57956
Slide 100973330048 PC15 t-test 1.54e-05 0.4825 0.23340 0.73155
Slide 101070190110 PC15 t-test 3.70e-03 0.3235 0.07443 0.57253
Slide 101070190033 PC15 t-test 4.67e-03 0.3292 0.06910 0.58927
Slide 101070190038 PC15 t-test 1.52e-06 0.5867 0.31453 0.85878
Slide 101070190137 PC15 t-test 9.92e-04 0.4233 0.13608 0.71042
Slide 101103430112 PC15 t-test 3.89e-04 0.3960 0.14666 0.64526
Slide 101103430114 PC15 t-test 1.08e-05 0.5360 0.26413 0.80788
Slide 101103430118 PC15 t-test 2.39e-03 0.3393 0.08961 0.58895
Slide 200078650136 PC15 t-test 8.50e-03 0.3063 0.04613 0.56646
Slide 200078650040 PC15 t-test 3.05e-04 -0.4403 -0.71261 -0.16792
Slide 200090270100 PC15 t-test 1.24e-03 -0.3598 -0.60875 -0.11092
Slide 200090280019 PC15 t-test 3.82e-04 -0.3957 -0.64443 -0.14690
sentrix_row PC15 F-test 7.57e-17 17.3725
sentrix_row 2 PC15 t-test 7.00e-05 -0.0977 -0.15216 -0.04318
sentrix_row 3 PC15 t-test 3.38e-06 -0.1109 -0.16376 -0.05802
sentrix_row 6 PC15 t-test 5.10e-16 0.1947 0.14182 0.24756
Slide PC16 F-test 1.20e-14 2.1860
Slide 3998888041 PC16 t-test 1.37e-03 -0.3548 -0.60255 -0.10708
Slide 101070190016 PC16 t-test 4.32e-04 0.3901 0.14252 0.63771
Slide 3998920007 PC16 t-test 1.15e-04 -0.4092 -0.64615 -0.17225
Slide 100973270085 PC16 t-test 8.10e-04 -0.3713 -0.61898 -0.12364
Slide 100973270100 PC16 t-test 2.82e-03 -0.3172 -0.55452 -0.07985
Slide 100973330037 PC16 t-test 1.51e-03 0.3530 0.10443 0.60165
Slide 101070190071 PC16 t-test 2.66e-04 0.3895 0.15093 0.62812
Slide 101070190088 PC16 t-test 3.56e-03 0.3232 0.07540 0.57110
Slide 200078650088 PC16 t-test 1.17e-05 -0.4854 -0.73255 -0.23827
Slide 200078650152 PC16 t-test 3.64e-03 -0.3246 -0.57407 -0.07508
Slide 200078650041 PC16 t-test 7.24e-03 -0.2996 -0.54900 -0.05024
Slide 200078650129 PC16 t-test 2.66e-04 -0.4041 -0.65165 -0.15658
sentrix_row PC16 F-test 4.67e-03 3.3945
sentrix_row 6 PC16 t-test 4.14e-05 0.0936 0.04298 0.14421
Batch PC17 F-test 2.76e-05 17.6665
Batch 1 PC17 t-test 3.67e-05 -0.0646 -0.09868 -0.03056
Batch 2 PC17 t-test 1.61e-06 0.0738 0.04040 0.10714
Slide PC17 F-test 4.81e-30 3.0419
Slide 3998888171 PC17 t-test 7.84e-03 -0.2544 -0.46818 -0.04052
Slide 3998888087 PC17 t-test 4.61e-04 -0.3212 -0.52601 -0.11635
Slide 3998888176 PC17 t-test 5.43e-03 0.2547 0.04998 0.45947
Slide 101070190002 PC17 t-test 2.57e-03 -0.2761 -0.48079 -0.07145
Slide 3998888023 PC17 t-test 3.41e-05 -0.3959 -0.60913 -0.18264
Slide 3998919138 PC17 t-test 5.10e-03 -0.2570 -0.46212 -0.05189
Slide 3998920007 PC17 t-test 2.41e-04 -0.3361 -0.54052 -0.13167
Slide 100973330088 PC17 t-test 1.92e-03 -0.2841 -0.48876 -0.07949
Slide 100973270094 PC17 t-test 1.23e-03 0.3100 0.09571 0.52423
Slide 100973270100 PC17 t-test 1.33e-03 0.2949 0.08957 0.50018
Slide 100973330003 PC17 t-test 1.35e-04 0.3511 0.14574 0.55639
Slide 100973330044 PC17 t-test 2.72e-03 -0.2891 -0.50460 -0.07361
Slide 101070190051 PC17 t-test 7.99e-03 0.2537 0.03991 0.46758
Slide 101070190109 PC17 t-test 6.12e-03 0.2627 0.04849 0.47693
Slide 101070190115 PC17 t-test 2.69e-05 0.4205 0.19693 0.64408
Slide 101130760004 PC17 t-test 6.53e-03 0.2492 0.04440 0.45393
Slide 100994770033 PC17 t-test 2.62e-06 -0.4497 -0.66314 -0.23618
Slide 101070190071 PC17 t-test 5.78e-05 0.3680 0.16372 0.57228
Slide 101070190161 PC17 t-test 1.46e-03 0.2921 0.08704 0.49720
Slide 101130760008 PC17 t-test 5.47e-03 0.2545 0.04975 0.45924
Slide 200078650234 PC17 t-test 8.49e-03 0.2416 0.03641 0.44677
Slide 200078650003 PC17 t-test 2.99e-08 -0.5307 -0.74410 -0.31736
Slide 200078650192 PC17 t-test 8.07e-06 0.4282 0.21412 0.64227
Slide 200078650021 PC17 t-test 1.38e-04 -0.4034 -0.63978 -0.16712
Slide 200078650045 PC17 t-test 8.32e-03 -0.2418 -0.44654 -0.03697
Slide 200078650001 PC17 t-test 1.24e-04 -0.4592 -0.72641 -0.19195
Slide 200078650041 PC17 t-test 9.54e-04 -0.3178 -0.53265 -0.10288
Slide 200078650089 PC17 t-test 6.39e-05 -0.4005 -0.62421 -0.17687
sentrix_row PC17 F-test 3.26e-03 3.5670
sentrix_row 1 PC17 t-test 3.59e-05 -0.0814 -0.12505 -0.03772
Sex F PC17 t-test 5.04e-03 0.0436 0.00963 0.07747
Batch PC18 F-test 5.12e-07 25.3925
Batch 1 PC18 t-test 1.85e-06 0.0682 0.03714 0.09935
Batch 2 PC18 t-test 2.24e-07 -0.0757 -0.10738 -0.04397
Slide PC18 F-test 1.72e-137 8.7103
Slide 3998888067 PC18 t-test 5.09e-03 -0.2531 -0.45497 -0.05114
Slide 3998888109 PC18 t-test 1.16e-05 -0.3956 -0.59689 -0.19430
Slide 3998888170 PC18 t-test 1.77e-03 -0.2704 -0.46367 -0.07714
Slide 3998888177 PC18 t-test 7.66e-03 -0.2307 -0.42414 -0.03733
Slide 3998888008 PC18 t-test 4.21e-03 -0.2486 -0.44266 -0.05446
Slide 3998888045 PC18 t-test 2.90e-03 -0.2690 -0.47083 -0.06712
Slide 3998888068 PC18 t-test 3.59e-06 -0.4010 -0.59406 -0.20795
Slide 3998888081 PC18 t-test 3.55e-03 -0.2522 -0.44553 -0.05886
Slide 3998888083 PC18 t-test 3.31e-04 -0.3103 -0.50344 -0.11723
Slide 3998888086 PC18 t-test 2.62e-05 -0.3801 -0.58192 -0.17832
Slide 101103430091 PC18 t-test 3.97e-03 0.2492 0.05585 0.44253
Slide 3998919043 PC18 t-test 3.46e-04 -0.3104 -0.50410 -0.11662
Slide 3998919058 PC18 t-test 2.43e-04 -0.3313 -0.53287 -0.12965
Slide 3998919138 PC18 t-test 3.75e-03 -0.2507 -0.44406 -0.05738
Slide 100973270154 PC18 t-test 3.58e-09 0.5107 0.31803 0.70338
Slide 100973270155 PC18 t-test 1.39e-05 0.4110 0.19989 0.62207
Slide 100973330047 PC18 t-test 9.03e-07 0.4248 0.23192 0.61766
Slide 100973330054 PC18 t-test 6.26e-03 0.2470 0.04505 0.44891
Slide 100973330065 PC18 t-test 1.39e-07 0.4766 0.27490 0.67837
Slide 100973330082 PC18 t-test 1.09e-08 0.4930 0.30088 0.68503
Slide 100973330088 PC18 t-test 1.23e-03 0.2794 0.08621 0.47268
Slide 101070190070 PC18 t-test 1.45e-06 0.4160 0.22342 0.60855
Slide 100973270089 PC18 t-test 7.87e-04 0.3032 0.10143 0.50488
Slide 100973270094 PC18 t-test 8.03e-03 0.2395 0.03753 0.44144
Slide 100973270100 PC18 t-test 4.56e-03 0.2454 0.05203 0.43874
Slide 100973270128 PC18 t-test 4.73e-03 0.2558 0.05342 0.45817
Slide 101070190089 PC18 t-test 1.41e-03 0.2767 0.08304 0.47034
Slide 101070190099 PC18 t-test 1.08e-04 0.3346 0.14160 0.52758
Slide 101070190111 PC18 t-test 5.37e-04 0.3284 0.11647 0.54030
Slide 101070190115 PC18 t-test 4.27e-07 0.4778 0.26712 0.68853
Slide 101130760004 PC18 t-test 1.66e-05 0.3729 0.17966 0.56610
Slide 100994770033 PC18 t-test 4.35e-15 0.7066 0.50670 0.90641
Slide 101070190071 PC18 t-test 3.78e-04 0.3074 0.11426 0.50049
Slide 101070190088 PC18 t-test 6.49e-03 0.2459 0.04398 0.44786
Slide 101070190137 PC18 t-test 1.01e-03 0.3288 0.10538 0.55216
Slide 101070190161 PC18 t-test 7.69e-03 0.2306 0.03722 0.42403
Slide 101130760008 PC18 t-test 4.71e-06 0.3953 0.20264 0.58800
Slide 200078650086 PC18 t-test 1.46e-05 -0.3919 -0.59371 -0.19015
Slide 200078650097 PC18 t-test 5.28e-04 -0.3007 -0.49450 -0.10693
Slide 200078650115 PC18 t-test 5.16e-03 -0.2527 -0.45458 -0.05075
Slide 200078650040 PC18 t-test 1.35e-04 -0.3635 -0.57605 -0.15085
Slide 200078650090 PC18 t-test 1.53e-04 -0.3602 -0.57268 -0.14773
Slide 200090270102 PC18 t-test 2.80e-03 -0.2700 -0.47181 -0.06810
Slide 200090270152 PC18 t-test 5.16e-05 -0.3830 -0.59427 -0.17181
Slide 200090280005 PC18 t-test 2.16e-03 -0.2653 -0.45863 -0.07206
Slide 200090280009 PC18 t-test 1.09e-03 -0.3093 -0.52081 -0.09770
Slide 200078650189 PC18 t-test 1.03e-03 -0.2839 -0.47714 -0.09071
Slide 200078650109 PC18 t-test 3.23e-04 -0.3264 -0.52905 -0.12369
Slide 200078650129 PC18 t-test 4.12e-03 -0.2608 -0.46396 -0.05765
Slide 200078650232 PC18 t-test 3.71e-03 -0.2511 -0.44441 -0.05773
Slide 200078650237 PC18 t-test 4.86e-07 -0.4546 -0.65606 -0.25315
Slide 200078650240 PC18 t-test 2.66e-03 -0.2599 -0.45324 -0.06663
sentrix_row PC18 F-test 6.22e-08 8.4637
sentrix_row 3 PC18 t-test 2.02e-04 -0.0694 -0.11083 -0.02799
sentrix_row 4 PC18 t-test 1.54e-04 -0.0720 -0.11417 -0.02980
sentrix_row 6 PC18 t-test 1.71e-06 0.0889 0.04772 0.12999
Batch 2 PC19 t-test 6.63e-03 0.0311 0.00619 0.05603
Slide PC19 F-test 1.05e-57 4.4572
Slide 3998888019 PC19 t-test 2.95e-07 -0.3362 -0.48236 -0.18999
Slide 3998888067 PC19 t-test 1.51e-04 -0.2586 -0.41100 -0.10623
Slide 3998888170 PC19 t-test 6.60e-06 -0.2933 -0.43848 -0.14806
Slide 3998888171 PC19 t-test 3.21e-03 -0.2006 -0.35270 -0.04848
Slide 3998888008 PC19 t-test 3.76e-04 0.2363 0.08789 0.38465
Slide 3998888022 PC19 t-test 8.82e-03 0.1795 0.02630 0.33276
Slide 3998888083 PC19 t-test 2.68e-03 0.1961 0.05014 0.34205
Slide 3998888087 PC19 t-test 1.08e-11 0.4415 0.29704 0.58593
Slide 101070190050 PC19 t-test 6.99e-03 -0.1765 -0.32275 -0.03024
Slide 101103430092 PC19 t-test 8.06e-03 -0.1807 -0.33319 -0.02825
Slide 101103430129 PC19 t-test 7.34e-04 0.2200 0.07447 0.36559
Slide 3998919058 PC19 t-test 4.41e-03 -0.1938 -0.34593 -0.04166
Slide 100973330082 PC19 t-test 5.15e-03 0.1824 0.03668 0.32809
Slide 101070190049 PC19 t-test 1.93e-03 -0.2021 -0.34771 -0.05644
Slide 100973270083 PC19 t-test 2.71e-07 -0.3357 -0.48123 -0.19017
Slide 100973270100 PC19 t-test 9.15e-04 -0.2183 -0.36547 -0.07122
Slide 100973270128 PC19 t-test 5.66e-04 -0.2359 -0.38883 -0.08306
Slide 101070190051 PC19 t-test 2.87e-03 -0.2032 -0.35560 -0.05087
Slide 101070190109 PC19 t-test 9.35e-04 0.2257 0.07335 0.37808
Slide 100994770033 PC19 t-test 2.91e-04 -0.2474 -0.39996 -0.09493
Slide 101070190071 PC19 t-test 8.32e-03 0.1725 0.02638 0.31852
Slide 200078650161 PC19 t-test 1.07e-03 0.2145 0.06806 0.36094
Slide 200078650234 PC19 t-test 3.38e-05 0.2728 0.12597 0.41972
Slide 200078650257 PC19 t-test 4.02e-03 0.1882 0.04200 0.33434
Slide 200078650003 PC19 t-test 5.88e-09 -0.3969 -0.54882 -0.24504
Slide 200078650086 PC19 t-test 5.26e-03 -0.1900 -0.34210 -0.03781
Slide 200078650192 PC19 t-test 4.37e-05 -0.2779 -0.42966 -0.12611
Slide 200078650110 PC19 t-test 6.66e-05 0.2618 0.11526 0.40840
Slide 200090270100 PC19 t-test 2.08e-10 0.4149 0.26966 0.56019
Slide 200090280009 PC19 t-test 2.74e-04 0.2595 0.10022 0.41881
Slide 200078650170 PC19 t-test 7.64e-05 0.2576 0.11219 0.40298
Slide 200078650173 PC19 t-test 2.06e-09 0.4111 0.25839 0.56383
Slide 200078650001 PC19 t-test 5.34e-03 -0.2374 -0.42798 -0.04691
Slide 200078650189 PC19 t-test 2.12e-03 -0.2007 -0.34657 -0.05474
Slide 200078650041 PC19 t-test 2.05e-06 -0.3226 -0.47412 -0.17105
Slide 200078650064 PC19 t-test 6.38e-07 -0.3567 -0.51644 -0.19697
Slide 200078650109 PC19 t-test 4.07e-04 -0.2405 -0.39245 -0.08855
Slide 200078650159 PC19 t-test 3.09e-03 0.2014 0.04927 0.35348
sentrix_row PC19 F-test 3.56e-04 4.6005
sentrix_row 1 PC19 t-test 1.37e-06 -0.0685 -0.09986 -0.03706
Batch PC20 F-test 1.95e-11 45.5763
Batch 1 PC20 t-test 1.93e-16 -0.0907 -0.11452 -0.06688
Batch 2 PC20 t-test 7.99e-10 0.0692 0.04480 0.09357
Slide PC20 F-test 9.21e-31 3.0797
Slide 3998888072 PC20 t-test 3.79e-04 -0.2296 -0.37394 -0.08534
Slide 3998888059 PC20 t-test 1.06e-03 -0.2321 -0.39042 -0.07369
Slide 3998888068 PC20 t-test 3.34e-03 0.1893 0.04514 0.33352
Slide 3998888087 PC20 t-test 1.18e-05 -0.2822 -0.42602 -0.13846
Slide 101070190002 PC20 t-test 2.43e-03 -0.1956 -0.33979 -0.05146
Slide 101070190016 PC20 t-test 1.92e-05 -0.2888 -0.43955 -0.13797
Slide 101070190031 PC20 t-test 1.17e-05 -0.2839 -0.42840 -0.13935
Slide 3998888065 PC20 t-test 3.91e-03 -0.1862 -0.33039 -0.04199
Slide 3998888069 PC20 t-test 1.33e-03 -0.2070 -0.35110 -0.06285
Slide 100973270154 PC20 t-test 1.61e-03 -0.2035 -0.34762 -0.05934
Slide 100973330054 PC20 t-test 2.56e-03 -0.2032 -0.35374 -0.05265
Slide 100973270089 PC20 t-test 4.28e-03 -0.1930 -0.34393 -0.04202
Slide 100973330044 PC20 t-test 1.29e-04 -0.2612 -0.41351 -0.10883
Slide 100973330048 PC20 t-test 9.80e-03 -0.1674 -0.31219 -0.02251
Slide 101070190099 PC20 t-test 1.51e-04 -0.2444 -0.38833 -0.10039
Slide 101070190071 PC20 t-test 4.45e-03 -0.1847 -0.32981 -0.03956
Slide 101070190121 PC20 t-test 1.90e-04 -0.2417 -0.38642 -0.09706
Slide 200078650218 PC20 t-test 3.99e-03 0.1940 0.04341 0.34457
Slide 200078650257 PC20 t-test 7.24e-04 0.2180 0.07395 0.36211
Slide 200078650003 PC20 t-test 1.27e-04 0.2585 0.10787 0.40921
Slide 200078650021 PC20 t-test 1.45e-03 0.2383 0.07108 0.40553
Slide 200078650040 PC20 t-test 5.70e-03 -0.1980 -0.35816 -0.03794
Slide 200090270152 PC20 t-test 4.69e-03 0.1998 0.04187 0.35767
Slide 200090280009 PC20 t-test 2.60e-06 0.3322 0.17451 0.48981
Slide 200090280019 PC20 t-test 3.47e-05 0.2674 0.12325 0.41165
Slide 200078650064 PC20 t-test 1.01e-04 0.2745 0.11688 0.43207
Slide 200078650237 PC20 t-test 5.11e-03 0.1887 0.03806 0.33925
sentrix_row PC20 F-test 2.20e-03 3.7524
sentrix_row 1 PC20 t-test 1.48e-04 -0.0528 -0.08361 -0.02192
sentrix_row 6 PC20 t-test 4.48e-03 -0.0403 -0.07173 -0.00883
Sex F PC20 t-test 8.51e-04 -0.0371 -0.06145 -0.01283

Principal components of the normalized betas

The following plots show the first 3 principal components of the most variable probes colored by batch variables. Batch variables with more than 10 levels are omitted.

plot of chunk unnamed-chunk-67

plot of chunk unnamed-chunk-69

plot of chunk unnamed-chunk-71

plot of chunk unnamed-chunk-73

plot of chunk unnamed-chunk-75

Normalized probe associations with measured batch variables

The most variable normalized probes were extracted, decomposed into principal components and each component regressed against each batch variable. If the normalization has performed well then there will be no associations between normalized probe PCs and batch variables. Horizontal dotted line denotes \(p = 0.05\) in log-scale.

plot of chunk unnamed-chunk-77

plot of chunk unnamed-chunk-79

plot of chunk unnamed-chunk-81

plot of chunk unnamed-chunk-83

plot of chunk unnamed-chunk-85

plot of chunk unnamed-chunk-87

plot of chunk unnamed-chunk-89

The following plots show regression coefficients when each principal component is regressed against each batch variable level along with 95% confidence intervals. Cases significantly different from zero are coloured red (p < 0.01, t-test).

plot of chunk unnamed-chunk-90

plot of chunk unnamed-chunk-91

plot of chunk unnamed-chunk-92

plot of chunk unnamed-chunk-93

plot of chunk unnamed-chunk-94

plot of chunk unnamed-chunk-95

plot of chunk unnamed-chunk-96

plot of chunk unnamed-chunk-97

plot of chunk unnamed-chunk-98

plot of chunk unnamed-chunk-99

plot of chunk unnamed-chunk-100

plot of chunk unnamed-chunk-101

plot of chunk unnamed-chunk-102

plot of chunk unnamed-chunk-103

plot of chunk unnamed-chunk-104

plot of chunk unnamed-chunk-105

plot of chunk unnamed-chunk-106

plot of chunk unnamed-chunk-107

plot of chunk unnamed-chunk-108

plot of chunk unnamed-chunk-109

batch.variable batch.value principal.component test p.value estimate lower upper
Sample.Set PC1 F-test 6.32e-28 64.752
Sample.Set George_Mellick PC1 t-test 5.44e-29 5.460 4.4542 6.4648
Sample.Set Ian Hickie PC1 t-test 1.57e-05 -4.109 -6.2300 -1.9874
Sample.Set Martin_Kennedy PC1 t-test 2.28e-24 -5.272 -6.4095 -4.1352
Slide PC1 F-test 2.48e-03 1.357
Slide 3998920007 PC1 t-test 8.29e-03 -5.462 -10.0862 -0.8375
Slide 100973330082 PC1 t-test 3.48e-03 -6.056 -10.6888 -1.4234
Sex PC1 F-test 4.07e-08 30.365
Sex M PC1 t-test 6.11e-07 -1.696 -2.4314 -0.9602
Sex F PC1 t-test 2.13e-09 2.022 1.2870 2.7571
AGE_all PC1 F-test 7.21e-03 7.236
Batch PC2 F-test 3.18e-04 13.008
Batch 1 PC2 t-test 1.20e-03 -0.645 -1.0788 -0.2121
Batch 2 PC2 t-test 6.98e-20 -2.007 -2.4800 -1.5345
Sample.Set PC2 F-test 2.29e-05 10.743
Sample.Set George_Mellick PC2 t-test 7.71e-06 -1.618 -2.3735 -0.8635
Slide PC2 F-test 4.77e-12 2.025
Slide 3998888067 PC2 t-test 7.51e-03 -2.325 -4.2693 -0.3811
Slide 3998888061 PC2 t-test 1.03e-06 -4.171 -6.0744 -2.2679
Slide 3998888071 PC2 t-test 6.15e-03 2.376 0.4378 4.3137
Slide 101070190050 PC2 t-test 4.00e-05 -3.522 -5.4357 -1.6081
Slide 101103430091 PC2 t-test 3.09e-03 -2.484 -4.3604 -0.6078
Slide 101070190061 PC2 t-test 1.26e-03 2.795 0.8584 4.7311
Slide 101070190062 PC2 t-test 1.56e-03 2.625 0.7707 4.4800
Slide 101070190063 PC2 t-test 8.02e-06 4.060 2.0310 6.0883
Slide 101070190070 PC2 t-test 9.14e-03 2.169 0.3091 4.0292
Slide 101070190150 PC2 t-test 4.35e-03 2.373 0.5133 4.2319
Slide 101130760005 PC2 t-test 2.43e-04 3.045 1.1918 4.8973
Slide 100973270083 PC2 t-test 6.64e-08 -4.505 -6.3633 -2.6466
Slide 100973270089 PC2 t-test 1.06e-04 -3.422 -5.3934 -1.4513
Slide 100973270094 PC2 t-test 1.34e-05 -3.814 -5.7685 -1.8587
Slide 100973270100 PC2 t-test 2.24e-04 -3.072 -4.9314 -1.2133
Slide 100973270128 PC2 t-test 2.62e-13 -6.485 -8.4541 -4.5163
Slide 100973270129 PC2 t-test 7.62e-12 -5.874 -7.7815 -3.9675
Slide 100973270135 PC2 t-test 4.06e-03 -2.392 -4.2518 -0.5314
Slide 100973270167 PC2 t-test 3.11e-06 -4.153 -6.1399 -2.1668
Slide 100973330003 PC2 t-test 2.97e-05 -3.533 -5.4220 -1.6448
Slide 100973330037 PC2 t-test 1.17e-15 -7.093 -9.0561 -5.1295
Slide 100973330043 PC2 t-test 7.61e-12 -6.066 -8.0355 -4.0970
Slide 100973330044 PC2 t-test 1.88e-27 -9.802 -11.7874 -7.8157
Slide 100973330048 PC2 t-test 3.65e-11 -5.691 -7.6025 -3.7789
Slide 100973330051 PC2 t-test 1.61e-13 -6.398 -8.3225 -4.4727
Slide 101070190089 PC2 t-test 3.61e-05 -3.480 -5.3594 -1.5997
Slide 101070190017 PC2 t-test 2.93e-04 -3.035 -4.9061 -1.1634
Slide 101070190018 PC2 t-test 4.62e-06 -4.026 -5.9865 -2.0657
Slide 101070190033 PC2 t-test 2.34e-16 -7.458 -9.4730 -5.4439
Slide 101070190115 PC2 t-test 1.03e-03 -2.990 -5.0244 -0.9553
Slide 101070190038 PC2 t-test 1.90e-03 -2.844 -4.8902 -0.7977
Slide 101070190088 PC2 t-test 2.93e-03 -2.597 -4.5485 -0.6465
Slide 200078650161 PC2 t-test 2.93e-03 -2.538 -4.4436 -0.6319
Slide 200078650218 PC2 t-test 2.22e-12 -6.254 -8.2333 -4.2750
Slide 200078650234 PC2 t-test 4.57e-03 -2.382 -4.2580 -0.5050
Slide 200078650257 PC2 t-test 1.03e-04 -3.272 -5.1529 -1.3903
Slide 200078650115 PC2 t-test 3.33e-05 -3.635 -5.5893 -1.6798
Slide 200078650136 PC2 t-test 1.01e-03 -2.884 -4.8444 -0.9236
Slide 200078650021 PC2 t-test 4.20e-04 -3.453 -5.6389 -1.2665
Slide 200078650040 PC2 t-test 3.25e-03 -2.708 -4.7650 -0.6518
Slide 200078650090 PC2 t-test 4.98e-06 -4.223 -6.2856 -2.1595
Slide 200078650110 PC2 t-test 2.50e-03 -2.580 -4.4868 -0.6729
Slide 200078650111 PC2 t-test 5.85e-05 -3.351 -5.2117 -1.4895
Slide 200090270158 PC2 t-test 1.98e-03 -2.666 -4.5912 -0.7405
Slide 200090280007 PC2 t-test 1.64e-13 -7.266 -9.4531 -5.0792
Slide 200090280009 PC2 t-test 2.86e-03 -2.735 -4.7843 -0.6858
Slide 200078650152 PC2 t-test 8.76e-03 -2.298 -4.2570 -0.3384
Slide 200078650194 PC2 t-test 7.91e-06 -4.149 -6.2211 -2.0771
Slide 200078650244 PC2 t-test 7.71e-03 -2.449 -4.5026 -0.3946
Slide 200078650255 PC2 t-test 5.30e-04 -3.082 -5.0677 -1.0954
Slide 200078650189 PC2 t-test 6.10e-03 -2.333 -4.2339 -0.4317
Slide 200090270021 PC2 t-test 2.32e-04 -3.780 -6.0738 -1.4867
Slide 200090280029 PC2 t-test 2.26e-09 -5.383 -7.3880 -3.3788
Slide 200090280040 PC2 t-test 2.82e-03 -2.520 -4.4055 -0.6345
Slide 200090280042 PC2 t-test 4.89e-03 -2.345 -4.2082 -0.4826
Slide 200078650051 PC2 t-test 3.44e-05 -3.692 -5.6807 -1.7025
Slide 200078650109 PC2 t-test 2.53e-10 -5.674 -7.6692 -3.6784
Slide 200078650112 PC2 t-test 7.49e-08 -5.057 -7.1519 -2.9623
Slide 200078650123 PC2 t-test 7.89e-03 -2.233 -4.1120 -0.3543
Slide 200078650187 PC2 t-test 1.52e-03 -2.788 -4.7512 -0.8238
sentrix_col 1 PC2 t-test 1.11e-13 -1.630 -2.1040 -1.1565
sentrix_col 2 PC2 t-test 2.85e-07 -1.029 -1.4633 -0.5940
sentrix_row 1 PC2 t-test 7.43e-09 -1.245 -1.7217 -0.7692
sentrix_row 2 PC2 t-test 3.47e-09 -1.279 -1.7578 -0.8004
sentrix_row 3 PC2 t-test 3.40e-06 -1.042 -1.5388 -0.5454
sentrix_row 4 PC2 t-test 1.74e-14 -1.745 -2.2458 -1.2434
sentrix_row 5 PC2 t-test 5.41e-09 -1.216 -1.6771 -0.7556
sentrix_row 6 PC2 t-test 6.48e-12 -1.492 -1.9714 -1.0131
Sex PC2 F-test 1.24e-05 19.207
Sex M PC2 t-test 3.82e-21 -2.152 -2.6409 -1.6641
Batch PC3 F-test 5.46e-07 25.268
Batch 1 PC3 t-test 4.90e-11 0.944 0.6324 1.2549
Batch 2 PC3 t-test 8.96e-06 -0.616 -0.9172 -0.3148
Sample.Set PC3 F-test 2.07e-03 6.200
Sample.Set Martin_Kennedy PC3 t-test 1.69e-06 1.007 0.5398 1.4740
Slide PC3 F-test 1.02e-12 2.067
Slide 3998888067 PC3 t-test 5.94e-03 2.313 0.4339 4.1931
Slide 3998888072 PC3 t-test 4.53e-04 2.828 1.0268 4.6293
Slide 3998888177 PC3 t-test 2.53e-03 2.431 0.6322 4.2307
Slide 3998888180 PC3 t-test 8.66e-03 2.121 0.3151 3.9267
Slide 3998888041 PC3 t-test 1.09e-03 2.746 0.8683 4.6244
Slide 3998888068 PC3 t-test 1.69e-06 3.847 2.0548 5.6401
Slide 3998888071 PC3 t-test 1.87e-04 3.146 1.2655 5.0261
Slide 3998888176 PC3 t-test 4.38e-05 3.287 1.4916 5.0829
Slide 101070190002 PC3 t-test 8.52e-07 -3.980 -5.7832 -2.1773
Slide 101103430120 PC3 t-test 2.15e-03 -2.580 -4.4590 -0.7017
Slide 101103430129 PC3 t-test 8.11e-03 -2.132 -3.9328 -0.3322
Slide 3998888017 PC3 t-test 6.80e-06 3.778 1.9045 5.6509
Slide 3998920007 PC3 t-test 2.72e-03 2.414 0.6142 4.2129
Slide 100973270154 PC3 t-test 6.83e-04 2.797 0.9574 4.6369
Slide 101070190063 PC3 t-test 4.77e-03 2.488 0.5175 4.4588
Slide 100973270135 PC3 t-test 7.15e-06 3.743 1.8824 5.6030
Slide 101070190033 PC3 t-test 9.97e-05 3.305 1.4087 5.2019
Slide 101070190038 PC3 t-test 8.39e-03 -2.325 -4.2957 -0.3533
Slide 200078650055 PC3 t-test 7.21e-03 -2.260 -4.1396 -0.3801
Slide 200078650118 PC3 t-test 4.53e-03 -2.387 -4.2662 -0.5075
sentrix_row PC3 F-test 2.09e-03 3.776
sentrix_row 1 PC3 t-test 4.67e-04 0.606 0.2219 0.9909
sentrix_row 3 PC3 t-test 1.45e-04 0.696 0.2898 1.1024
Sex PC3 F-test 1.28e-16 69.755
Sex M PC3 t-test 3.39e-18 1.292 0.9724 1.6107
Sex F PC3 t-test 7.87e-14 -0.995 -1.2835 -0.7057
AGE_all PC3 F-test 8.72e-31 137.907
Batch PC4 F-test 4.82e-04 12.225
Batch 1 PC4 t-test 2.34e-03 -0.350 -0.6000 -0.0994
Batch 2 PC4 t-test 3.69e-05 0.465 0.2202 0.7100
Sample.Set PC4 F-test 7.19e-03 4.948
Sample.Set Ian Hickie PC4 t-test 7.05e-03 0.861 0.1474 1.5745
Slide PC4 F-test 3.45e-03 1.342
Slide 3998888072 PC4 t-test 5.46e-04 -2.396 -3.9448 -0.8480
Slide 101070190050 PC4 t-test 6.87e-04 2.342 0.8010 3.8839
Slide 200078650231 PC4 t-test 1.05e-03 2.381 0.7575 4.0051
Sex M PC4 t-test 8.66e-03 0.305 0.0531 0.5579
AGE_all PC4 F-test 9.11e-43 197.618
Batch PC5 F-test 2.71e-38 175.106
Batch 1 PC5 t-test 7.60e-45 1.205 1.0231 1.3875
Batch 2 PC5 t-test 8.77e-41 -1.170 -1.3558 -0.9838
Slide PC5 F-test 1.62e-61 4.651
Slide 3998888170 PC5 t-test 5.00e-03 1.498 0.3053 2.6913
Slide 3998888041 PC5 t-test 1.10e-03 1.818 0.5736 3.0632
Slide 3998888083 PC5 t-test 7.61e-03 1.425 0.2315 2.6179
Slide 3998888086 PC5 t-test 8.66e-03 1.463 0.2172 2.7093
Slide 101070190002 PC5 t-test 1.28e-09 3.234 2.0479 4.4200
Slide 101070190016 PC5 t-test 1.64e-05 2.398 1.1560 3.6403
Slide 101070190031 PC5 t-test 3.21e-05 2.217 1.0266 3.4066
Slide 101070190050 PC5 t-test 2.35e-07 2.758 1.5686 3.9473
Slide 101103430092 PC5 t-test 2.15e-10 3.560 2.3123 4.8072
Slide 101103430120 PC5 t-test 1.86e-05 2.383 1.1405 3.6250
Slide 101103430129 PC5 t-test 1.21e-03 1.727 0.5350 2.9193
Slide 100973270154 PC5 t-test 7.28e-04 1.803 0.6109 2.9946
Slide 100973270155 PC5 t-test 2.78e-05 2.446 1.1434 3.7490
Slide 100973270162 PC5 t-test 1.56e-04 2.017 0.8258 3.2077
Slide 100973330047 PC5 t-test 2.12e-03 1.640 0.4477 2.8326
Slide 100973330054 PC5 t-test 9.63e-04 1.839 0.5945 3.0840
Slide 100973330088 PC5 t-test 1.49e-04 2.036 0.8375 3.2349
Slide 101070190063 PC5 t-test 4.93e-03 1.643 0.3371 2.9494
Slide 100973270083 PC5 t-test 7.73e-03 -1.427 -2.6237 -0.2296
Slide 100973270100 PC5 t-test 6.48e-03 -1.453 -2.6463 -0.2601
Slide 101070190123 PC5 t-test 4.25e-03 -1.529 -2.7241 -0.3337
Slide 101070190018 PC5 t-test 6.23e-03 -1.529 -2.7782 -0.2796
Slide 101070190111 PC5 t-test 6.30e-03 -1.596 -2.9028 -0.2901
Slide 101103430112 PC5 t-test 1.46e-03 -1.703 -2.8981 -0.5077
Slide 101103430118 PC5 t-test 2.22e-04 -1.969 -3.1604 -0.7782
Slide 200078650234 PC5 t-test 1.75e-03 -1.670 -2.8621 -0.4773
Slide 200078650130 PC5 t-test 1.90e-03 1.756 0.4925 3.0203
Slide 200078650021 PC5 t-test 8.15e-03 1.630 0.2527 3.0064
Slide 200090270100 PC5 t-test 4.33e-03 -1.523 -2.7156 -0.3298
Slide 200090270152 PC5 t-test 1.67e-03 -1.837 -3.1424 -0.5314
Slide 200090280005 PC5 t-test 8.85e-03 -1.398 -2.5909 -0.2043
Slide 200090280007 PC5 t-test 4.35e-03 -1.756 -3.1324 -0.3796
Slide 200090280009 PC5 t-test 2.54e-03 -1.764 -3.0693 -0.4578
Slide 200090280019 PC5 t-test 6.30e-04 -1.824 -3.0154 -0.6319
Slide 200090270021 PC5 t-test 9.72e-04 2.153 0.6948 3.6117
Slide 200090280042 PC5 t-test 4.36e-03 -1.522 -2.7145 -0.3287
Slide 200078650240 PC5 t-test 8.79e-03 -1.399 -2.5921 -0.2055
Slide 200078650258 PC5 t-test 6.88e-04 -1.891 -3.1353 -0.6463
Sex PC5 F-test 2.25e-78 386.136
Sex M PC5 t-test 4.10e-80 -1.646 -1.8253 -1.4661
Sex F PC5 t-test 2.24e-92 1.687 1.5158 1.8578
AGE_all PC5 F-test 6.15e-05 16.128
Batch PC6 F-test 3.10e-25 110.873
Batch 1 PC6 t-test 5.08e-22 0.743 0.5770 0.9086
Batch 2 PC6 t-test 1.13e-32 -0.989 -1.1662 -0.8113
Slide PC6 F-test 4.71e-18 2.387
Slide 3998888024 PC6 t-test 8.93e-03 1.171 0.1701 2.1729
Slide 3998888071 PC6 t-test 2.31e-03 1.425 0.3802 2.4702
Slide 3998888081 PC6 t-test 3.80e-03 1.296 0.2953 2.2973
Slide 3998888083 PC6 t-test 3.30e-05 1.862 0.8609 2.8628
Slide 3998888086 PC6 t-test 1.03e-03 1.534 0.4896 2.5788
Slide 101070190016 PC6 t-test 7.32e-03 1.255 0.2090 2.3002
Slide 101070190050 PC6 t-test 8.55e-03 1.182 0.1772 2.1864
Slide 3998888017 PC6 t-test 4.30e-03 1.335 0.2901 2.3808
Slide 101070190070 PC6 t-test 7.76e-03 1.193 0.1913 2.1941
Slide 100973270128 PC6 t-test 3.15e-04 -1.702 -2.7567 -0.6466
Slide 100973330003 PC6 t-test 2.79e-03 1.339 0.3383 2.3401
Slide 100973330048 PC6 t-test 3.70e-03 1.305 0.3004 2.3105
Slide 100973330051 PC6 t-test 5.94e-03 1.238 0.2323 2.2437
Slide 101070190017 PC6 t-test 1.95e-04 -1.673 -2.6762 -0.6702
Slide 101070190051 PC6 t-test 4.71e-04 -1.690 -2.7689 -0.6103
Slide 101130760004 PC6 t-test 1.85e-05 -1.948 -2.9637 -0.9328
Slide 101070190088 PC6 t-test 9.48e-03 -1.214 -2.2594 -0.1679
Slide 101130760008 PC6 t-test 2.93e-04 -1.621 -2.6208 -0.6214
Slide 101103430114 PC6 t-test 2.77e-03 -1.476 -2.5788 -0.3736
Slide 200078650234 PC6 t-test 1.00e-03 -1.473 -2.4732 -0.4725
Slide 200078650257 PC6 t-test 2.35e-03 -1.366 -2.3700 -0.3626
Slide 200078650130 PC6 t-test 4.36e-13 -3.550 -4.6387 -2.4614
Slide 200078650090 PC6 t-test 1.70e-04 -1.853 -2.9527 -0.7524
Slide 200078650045 PC6 t-test 4.04e-03 -1.288 -2.2889 -0.2868
Slide 200078650194 PC6 t-test 7.51e-05 -1.956 -3.0592 -0.8531
Slide 200078650118 PC6 t-test 6.10e-03 -1.286 -2.3339 -0.2378
Slide 200078650258 PC6 t-test 9.51e-03 -1.216 -2.2645 -0.1679
sentrix_row 5 PC6 t-test 6.17e-04 -0.337 -0.5547 -0.1186
Sex PC6 F-test 1.44e-19 83.717
Sex M PC6 t-test 5.10e-15 0.649 0.4706 0.8277
Sex F PC6 t-test 8.28e-31 -0.906 -1.0750 -0.7377
AGE_all PC6 F-test 3.08e-05 17.454
Batch PC7 F-test 2.33e-29 130.920
Batch 1 PC7 t-test 1.14e-29 -0.968 -1.1516 -0.7846
Batch 2 PC7 t-test 1.38e-26 0.894 0.7140 1.0732
Slide PC7 F-test 4.89e-101 6.697
Slide 3998888071 PC7 t-test 2.64e-03 1.665 0.4279 2.9031
Slide 3998888081 PC7 t-test 1.72e-03 1.663 0.4778 2.8477
Slide 101070190002 PC7 t-test 1.87e-14 -4.071 -5.2510 -2.8912
Slide 101070190016 PC7 t-test 1.14e-11 -3.774 -5.0101 -2.5376
Slide 101070190031 PC7 t-test 2.36e-09 -3.156 -4.3325 -1.9788
Slide 101070190050 PC7 t-test 3.31e-06 -2.462 -3.6437 -1.2812
Slide 101103430091 PC7 t-test 3.04e-13 -3.875 -5.0556 -2.6947
Slide 101103430092 PC7 t-test 7.10e-05 -2.198 -3.4337 -0.9630
Slide 101103430120 PC7 t-test 6.04e-07 -2.770 -4.0078 -1.5321
Slide 101103430129 PC7 t-test 1.01e-07 -2.824 -4.0061 -1.6422
Slide 3998888017 PC7 t-test 2.99e-03 -1.644 -2.8819 -0.4066
Slide 100973270154 PC7 t-test 2.25e-04 -1.955 -3.1391 -0.7715
Slide 100973270155 PC7 t-test 1.02e-03 -1.907 -3.2037 -0.6095
Slide 100973270162 PC7 t-test 1.36e-03 -1.699 -2.8838 -0.5142
Slide 100973330047 PC7 t-test 1.66e-04 -1.996 -3.1796 -0.8124
Slide 100973330065 PC7 t-test 3.95e-04 -1.961 -3.1978 -0.7249
Slide 100973330037 PC7 t-test 7.08e-03 -1.492 -2.7300 -0.2536
Slide 101070190089 PC7 t-test 7.99e-04 -1.778 -2.9624 -0.5934
Slide 101070190033 PC7 t-test 2.87e-03 1.651 0.4137 2.8890
Slide 101070190051 PC7 t-test 2.51e-04 2.026 0.7902 3.2625
Slide 101070190115 PC7 t-test 4.10e-03 1.667 0.3689 2.9648
Slide 101070190071 PC7 t-test 7.54e-04 1.786 0.6019 2.9709
Slide 101070190161 PC7 t-test 5.37e-03 1.477 0.2912 2.6625
Slide 101103430113 PC7 t-test 4.99e-03 1.555 0.3173 2.7932
Slide 200078650257 PC7 t-test 5.72e-03 1.466 0.2802 2.6515
Slide 200090270102 PC7 t-test 1.07e-04 2.144 0.9084 3.3796
Slide 200090270158 PC7 t-test 9.95e-05 2.067 0.8810 3.2524
Slide 200090280007 PC7 t-test 4.77e-03 1.727 0.3593 3.0952
Slide 200090280009 PC7 t-test 8.07e-06 2.588 1.2942 3.8820
Slide 200090280019 PC7 t-test 2.17e-03 1.626 0.4412 2.8114
Slide 200078650255 PC7 t-test 7.68e-03 1.477 0.2385 2.7150
Slide 200078650001 PC7 t-test 5.19e-04 -2.412 -3.9649 -0.8595
Slide 200078650041 PC7 t-test 3.77e-03 -1.604 -2.8422 -0.3666
Slide 200078650089 PC7 t-test 1.19e-04 -2.233 -3.5290 -0.9376
Sex PC7 F-test 4.96e-84 417.647
Sex M PC7 t-test 3.00e-85 -1.631 -1.8030 -1.4592
Sex F PC7 t-test 3.75e-83 1.567 1.3984 1.7357
AGE_all PC7 F-test 5.19e-10 39.010
Sample.Set PC8 F-test 8.05e-04 7.152
Sample.Set George_Mellick PC8 t-test 6.95e-04 -0.391 -0.6317 -0.1502
Sample.Set Martin_Kennedy PC8 t-test 9.87e-05 0.473 0.2031 0.7437
Slide PC8 F-test 2.88e-03 1.350
Slide 3998888041 PC8 t-test 6.76e-03 -1.339 -2.4447 -0.2341
Slide 101070190002 PC8 t-test 8.78e-06 2.102 1.0467 3.1567
Slide 101103430092 PC8 t-test 2.24e-03 1.527 0.4109 2.6438
Slide 101103430129 PC8 t-test 9.11e-03 1.235 0.1765 2.2938
Slide 100973330054 PC8 t-test 2.05e-03 1.524 0.4192 2.6286
Slide 100973330088 PC8 t-test 4.41e-06 2.202 1.1317 3.2716
Slide 101070190038 PC8 t-test 5.55e-03 1.438 0.2789 2.5966
sentrix_row PC8 F-test 6.78e-04 4.303
sentrix_row 1 PC8 t-test 9.55e-04 -0.333 -0.5567 -0.1093
sentrix_row 6 PC8 t-test 1.24e-04 0.387 0.1635 0.6109
Sex PC8 F-test 1.88e-99 505.817
Sex M PC8 t-test 3.65e-102 1.623 1.4691 1.7777
Sex F PC8 t-test 5.86e-105 -1.582 -1.7312 -1.4328
AGE_all PC8 F-test 4.78e-08 30.047
Batch PC9 F-test 8.15e-04 11.244
Batch 1 PC9 t-test 6.61e-04 -0.244 -0.3994 -0.0878
Batch 2 PC9 t-test 9.17e-05 0.286 0.1271 0.4449
Slide 101070190051 PC9 t-test 1.00e-06 2.205 1.1995 3.2100
Slide 200078650130 PC9 t-test 4.73e-03 1.306 0.2728 2.3390
Slide 200078650250 PC9 t-test 2.52e-03 1.279 0.3332 2.2255
Sex PC9 F-test 1.79e-19 83.261
Sex M PC9 t-test 1.41e-19 0.677 0.5164 0.8377
Sex F PC9 t-test 1.12e-20 -0.644 -0.7928 -0.4944
AGE_all PC9 F-test 9.16e-25 108.604
Batch PC10 F-test 9.45e-04 10.966
Batch 1 PC10 t-test 2.29e-04 0.266 0.1088 0.4229
Sample.Set PC10 F-test 4.11e-03 5.510
Sample.Set George_Mellick PC10 t-test 1.80e-03 0.328 0.1086 0.5482
Sample.Set Martin_Kennedy PC10 t-test 6.03e-03 -0.300 -0.5423 -0.0568
Slide PC10 F-test 4.91e-74 5.288
Slide 3998888072 PC10 t-test 2.30e-04 -1.584 -2.5441 -0.6234
Slide 3998888170 PC10 t-test 1.46e-03 1.368 0.4072 2.3280
Slide 3998888171 PC10 t-test 8.23e-03 1.184 0.1824 2.1852
Slide 3998888061 PC10 t-test 6.85e-03 -1.160 -2.1189 -0.2011
Slide 3998888068 PC10 t-test 8.07e-07 -2.112 -3.0663 -1.1573
Slide 3998888071 PC10 t-test 4.44e-05 -1.827 -2.8258 -0.8282
Slide 3998888080 PC10 t-test 4.02e-07 -2.179 -3.1383 -1.2207
Slide 3998888081 PC10 t-test 2.31e-05 -1.813 -2.7695 -0.8571
Slide 3998888087 PC10 t-test 2.64e-03 -1.290 -2.2480 -0.3310
Slide 101070190002 PC10 t-test 4.63e-05 1.749 0.7906 2.7077
Slide 101070190016 PC10 t-test 1.86e-10 2.842 1.8495 3.8343
Slide 101070190031 PC10 t-test 8.06e-07 2.116 1.1598 3.0729
Slide 101070190050 PC10 t-test 1.76e-06 2.057 1.0972 3.0176
Slide 101103430091 PC10 t-test 1.23e-09 2.613 1.6556 3.5701
Slide 101103430092 PC10 t-test 9.32e-11 2.903 1.9059 3.9000
Slide 101103430120 PC10 t-test 2.37e-03 1.361 0.3604 2.3620
Slide 101103430129 PC10 t-test 5.02e-03 1.204 0.2450 2.1625
Slide 100973270154 PC10 t-test 2.17e-08 2.404 1.4469 3.3601
Slide 100973270155 PC10 t-test 8.07e-03 1.244 0.1945 2.2945
Slide 100973270162 PC10 t-test 1.31e-04 1.639 0.6818 2.5959
Slide 100973330047 PC10 t-test 4.58e-08 2.353 1.3940 3.3124
Slide 100973330054 PC10 t-test 2.79e-04 1.627 0.6270 2.6264
Slide 100973330065 PC10 t-test 1.69e-03 1.410 0.4064 2.4137
Slide 100973330088 PC10 t-test 3.68e-03 1.246 0.2872 2.2044
Slide 100973270129 PC10 t-test 3.63e-03 -1.248 -2.2063 -0.2891
Slide 100973330043 PC10 t-test 5.48e-03 1.244 0.2429 2.2453
Slide 101070190089 PC10 t-test 3.77e-03 1.243 0.2839 2.2012
Slide 200090270152 PC10 t-test 1.94e-03 -1.455 -2.5045 -0.4059
Slide 200090270158 PC10 t-test 8.26e-05 -1.687 -2.6439 -0.7303
Slide 200090280007 PC10 t-test 2.26e-03 -1.511 -2.6168 -0.4051
Slide 200078650001 PC10 t-test 4.08e-03 1.611 0.3572 2.8644
Slide 200090270021 PC10 t-test 1.85e-03 1.634 0.4612 2.8062
Slide 200078650041 PC10 t-test 4.63e-04 1.567 0.5674 2.5674
Slide 200078650064 PC10 t-test 3.80e-03 1.359 0.3097 2.4089
Slide 200078650240 PC10 t-test 7.74e-03 -1.143 -2.1016 -0.1836
sentrix_row PC10 F-test 1.98e-04 4.869
sentrix_row 1 PC10 t-test 7.18e-05 0.367 0.1620 0.5721
sentrix_row 6 PC10 t-test 9.58e-04 0.306 0.1005 0.5118
Sex PC10 F-test 3.50e-57 271.924
Sex M PC10 t-test 1.99e-55 -1.075 -1.2194 -0.9315
Sex F PC10 t-test 6.61e-63 1.165 1.0185 1.3117
Batch PC11 F-test 9.70e-13 51.609
Batch 1 PC11 t-test 1.33e-12 -0.478 -0.6247 -0.3323
Batch 2 PC11 t-test 4.89e-12 0.474 0.3257 0.6227
Sample.Set PC11 F-test 5.34e-04 7.565
Sample.Set Ian Hickie PC11 t-test 6.76e-04 0.648 0.2227 1.0742
Slide PC11 F-test 1.10e-11 2.002
Slide 3998888061 PC11 t-test 3.96e-03 -1.199 -2.1296 -0.2692
Slide 3998888081 PC11 t-test 2.07e-03 -1.276 -2.2017 -0.3502
Slide 3998888083 PC11 t-test 4.95e-03 -1.165 -2.0907 -0.2385
Slide 3998888086 PC11 t-test 7.56e-04 -1.457 -2.4229 -0.4906
Slide 3998888176 PC11 t-test 4.61e-03 -1.174 -2.1001 -0.2480
Slide 100973270129 PC11 t-test 7.06e-03 -1.116 -2.0427 -0.1901
Slide 100973270135 PC11 t-test 3.22e-04 -1.489 -2.4142 -0.5645
Slide 101070190123 PC11 t-test 1.50e-03 -1.315 -2.2406 -0.3895
Slide 101070190017 PC11 t-test 5.17e-03 1.161 0.2329 2.0885
Slide 200078650040 PC11 t-test 3.61e-03 1.324 0.3074 2.3404
Slide 200078650188 PC11 t-test 1.08e-03 1.483 0.4698 2.4962
Slide 200078650226 PC11 t-test 9.76e-03 1.071 0.1446 1.9974
Slide 200078650189 PC11 t-test 2.63e-03 1.249 0.3213 2.1771
Slide 200078650232 PC11 t-test 4.68e-04 1.454 0.5257 2.3824
Sex PC11 F-test 2.89e-07 26.510
Sex M PC11 t-test 4.21e-08 0.379 0.2295 0.5284
Sex F PC11 t-test 2.58e-08 -0.379 -0.5266 -0.2304
AGE_all PC11 F-test 1.15e-06 23.808
Batch PC12 F-test 6.01e-08 29.596
Batch 1 PC12 t-test 2.66e-07 -0.345 -0.4900 -0.1990
Batch 2 PC12 t-test 3.52e-07 0.340 0.1952 0.4849
Sample.Set Ian Hickie PC12 t-test 9.43e-03 0.488 0.0682 0.9075
Slide PC12 F-test 3.65e-36 3.361
Slide 3998888067 PC12 t-test 1.19e-04 -1.638 -2.5879 -0.6875
Slide 3998888024 PC12 t-test 2.69e-03 -1.224 -2.1354 -0.3126
Slide 3998888071 PC12 t-test 2.99e-03 -1.264 -2.2158 -0.3124
Slide 3998888080 PC12 t-test 2.34e-04 -1.500 -2.4100 -0.5895
Slide 3998888081 PC12 t-test 1.12e-04 -1.578 -2.4892 -0.6659
Slide 3998888086 PC12 t-test 6.01e-03 -1.170 -2.1221 -0.2180
Slide 3998888087 PC12 t-test 6.63e-04 -1.391 -2.3044 -0.4784
Slide 101070190050 PC12 t-test 2.10e-06 1.936 1.0255 2.8458
Slide 101103430091 PC12 t-test 3.25e-04 1.474 0.5581 2.3899
Slide 100973270155 PC12 t-test 1.66e-03 1.404 0.4067 2.4020
Slide 100973270162 PC12 t-test 2.19e-05 1.729 0.8199 2.6382
Slide 100973330065 PC12 t-test 2.82e-03 1.272 0.3200 2.2234
Slide 101070190062 PC12 t-test 9.70e-04 1.345 0.4343 2.2561
Slide 101070190150 PC12 t-test 4.57e-05 -1.661 -2.5704 -0.7514
Slide 100973270100 PC12 t-test 7.56e-04 -1.376 -2.2887 -0.4634
Slide 100973270135 PC12 t-test 2.42e-06 -1.928 -2.8398 -1.0157
Slide 100973330003 PC12 t-test 1.85e-03 -1.270 -2.1809 -0.3585
Slide 100973330037 PC12 t-test 4.50e-05 -1.739 -2.6907 -0.7876
Slide 100994770033 PC12 t-test 5.48e-04 1.471 0.5203 2.4221
Slide 200078650250 PC12 t-test 7.50e-03 1.091 0.1790 2.0026
Slide 200078650040 PC12 t-test 5.88e-03 1.235 0.2327 2.2368
Slide 200090270021 PC12 t-test 9.57e-04 1.648 0.5331 2.7621
Slide 200078650041 PC12 t-test 5.56e-03 1.181 0.2290 2.1330
sentrix_row 6 PC12 t-test 3.21e-03 0.256 0.0631 0.4483
Sex PC12 F-test 5.08e-10 39.055
Sex M PC12 t-test 2.23e-10 0.427 0.2814 0.5718
Sex F PC12 t-test 1.26e-10 -0.430 -0.5755 -0.2846
Batch 2 PC13 t-test 9.61e-03 -0.164 -0.3013 -0.0262
Sample.Set PC13 F-test 1.08e-08 18.523
Sample.Set George_Mellick PC13 t-test 3.31e-04 0.323 0.1354 0.5114
Sample.Set Martin_Kennedy PC13 t-test 4.52e-13 -0.676 -0.8825 -0.4694
Slide PC13 F-test 3.98e-03 1.335
Slide 3998888170 PC13 t-test 9.18e-04 1.136 0.3704 1.9021
Slide 3998888171 PC13 t-test 4.38e-03 1.019 0.2197 1.8185
Slide 3998888180 PC13 t-test 3.21e-03 1.007 0.2434 1.7715
Slide 3998888080 PC13 t-test 9.56e-03 -0.906 -1.6873 -0.1244
Slide 101070190031 PC13 t-test 8.07e-03 0.906 0.1415 1.6703
Slide 101070190070 PC13 t-test 1.04e-03 -1.124 -1.8892 -0.3582
Slide 101070190090 PC13 t-test 9.70e-03 -0.924 -1.7218 -0.1253
Slide 101070190148 PC13 t-test 2.56e-03 -1.031 -1.7951 -0.2672
Slide 101070190017 PC13 t-test 1.04e-03 -1.132 -1.9036 -0.3612
Slide 101130760004 PC13 t-test 2.18e-05 -1.490 -2.2730 -0.7065
Slide 101103430118 PC13 t-test 8.22e-04 -1.181 -1.9694 -0.3922
Slide 200090270102 PC13 t-test 6.38e-03 -0.985 -1.7923 -0.1779
Slide 200090280019 PC13 t-test 5.84e-03 -0.944 -1.7101 -0.1788
Slide 200078650210 PC13 t-test 7.43e-03 -1.010 -1.8537 -0.1666
Slide 200078650049 PC13 t-test 2.79e-03 1.251 0.3158 2.1853
sentrix_row 6 PC13 t-test 5.56e-03 -0.208 -0.3749 -0.0416
Sex PC13 F-test 2.07e-04 13.825
Sex M PC13 t-test 8.94e-05 -0.249 -0.3868 -0.1114
AGE_all PC13 F-test 5.11e-51 239.820
Batch PC14 F-test 2.26e-03 9.350
Batch 2 PC14 t-test 7.41e-04 -0.179 -0.2938 -0.0637
Sample.Set Martin_Kennedy PC14 t-test 8.25e-03 -0.139 -0.2556 -0.0219
Slide PC14 F-test 1.69e-07 1.715
Slide 3998888171 PC14 t-test 2.12e-03 -0.643 -1.1108 -0.1755
Slide 3998888022 PC14 t-test 7.31e-04 0.699 0.2366 1.1606
Slide 3998888068 PC14 t-test 6.29e-03 -0.536 -0.9739 -0.0975
Slide 3998888071 PC14 t-test 4.12e-03 -0.588 -1.0469 -0.1301
Slide 3998888080 PC14 t-test 2.30e-04 -0.725 -1.1637 -0.2854
Slide 3998888081 PC14 t-test 8.67e-07 -0.965 -1.4029 -0.5278
Slide 3998888083 PC14 t-test 4.28e-03 -0.560 -0.9981 -0.1219
Slide 3998888086 PC14 t-test 7.36e-05 -0.811 -1.2670 -0.3541
Slide 3998888087 PC14 t-test 6.30e-04 -0.670 -1.1074 -0.2321
Slide 3998919138 PC14 t-test 2.30e-04 -0.722 -1.1590 -0.2841
Slide 100973330065 PC14 t-test 3.15e-15 -1.791 -2.2946 -1.2872
Slide 101070190150 PC14 t-test 1.22e-06 -1.005 -1.4665 -0.5430
Slide 100973270085 PC14 t-test 8.99e-05 0.801 0.3443 1.2573
Slide 100973270094 PC14 t-test 7.51e-07 1.022 0.5614 1.4825
Slide 100973270100 PC14 t-test 7.15e-04 0.665 0.2260 1.1040
Slide 100973330043 PC14 t-test 7.46e-06 0.929 0.4665 1.3919
Slide 100973330048 PC14 t-test 4.53e-03 0.568 0.1208 1.0153
Slide 101070190089 PC14 t-test 3.28e-04 0.710 0.2687 1.1520
Slide 101070190097 PC14 t-test 1.16e-03 0.697 0.2178 1.1765
Slide 101070190098 PC14 t-test 3.44e-04 0.704 0.2648 1.1436
Slide 101070190110 PC14 t-test 1.32e-10 1.279 0.8364 1.7222
Slide 101070190123 PC14 t-test 8.16e-04 0.656 0.2182 1.0936
Slide 101070190148 PC14 t-test 1.31e-05 0.861 0.4202 1.3021
Slide 101130760004 PC14 t-test 6.61e-03 -0.553 -1.0078 -0.0979
Slide 101070190038 PC14 t-test 5.88e-03 0.596 0.1124 1.0798
Slide 200078650130 PC14 t-test 9.61e-08 -1.251 -1.7734 -0.7283
Slide 200078650090 PC14 t-test 1.02e-03 0.710 0.2272 1.1937
Slide 200078650110 PC14 t-test 3.32e-05 -0.825 -1.2691 -0.3815
Slide 200090270102 PC14 t-test 1.79e-04 -0.775 -1.2363 -0.3130
Slide 200090270158 PC14 t-test 3.51e-03 -0.576 -1.0169 -0.1351
Slide 200078650045 PC14 t-test 9.94e-04 -0.657 -1.1031 -0.2112
Slide 200078650188 PC14 t-test 3.38e-18 -2.192 -2.7493 -1.6339
Slide 200078650244 PC14 t-test 4.44e-13 -1.661 -2.1705 -1.1517
Slide 200078650189 PC14 t-test 8.78e-03 -0.523 -0.9690 -0.0769
Slide 200090270021 PC14 t-test 4.04e-04 0.853 0.3144 1.3917
Slide 200090280029 PC14 t-test 6.78e-04 -0.715 -1.1846 -0.2449
Slide 200078650051 PC14 t-test 1.36e-04 -0.801 -1.2701 -0.3324
Slide 200078650232 PC14 t-test 5.51e-07 -1.054 -1.5236 -0.5849
Slide 200078650237 PC14 t-test 7.74e-03 0.549 0.0883 1.0101
Slide 200078650240 PC14 t-test 3.51e-04 -0.707 -1.1491 -0.2653
Slide 200078650258 PC14 t-test 4.73e-03 -0.582 -1.0421 -0.1216
sentrix_row PC14 F-test 4.36e-03 3.428
sentrix_row 1 PC14 t-test 4.30e-03 -0.139 -0.2463 -0.0309
sentrix_row 2 PC14 t-test 3.12e-08 -0.322 -0.4503 -0.1931
Sex M PC14 t-test 2.68e-04 -0.176 -0.2804 -0.0714
Batch PC15 F-test 9.12e-03 6.813
Batch 2 PC15 t-test 4.33e-05 0.213 0.0999 0.3260
Sample.Set Ian Hickie PC15 t-test 6.92e-05 0.467 0.2051 0.7282
Slide PC15 F-test 2.57e-07 1.702
Slide 3998888177 PC15 t-test 1.53e-04 -0.966 -1.5363 -0.3963
Slide 3998888022 PC15 t-test 8.93e-05 1.046 0.4500 1.6423
Slide 100973270154 PC15 t-test 2.24e-03 -0.778 -1.3476 -0.2094
Slide 100973270155 PC15 t-test 6.22e-03 -0.763 -1.3865 -0.1396
Slide 101070190049 PC15 t-test 2.75e-03 -0.765 -1.3364 -0.1941
Slide 101070190150 PC15 t-test 1.99e-03 0.791 0.2193 1.3619
Slide 100973270083 PC15 t-test 2.76e-10 -1.615 -2.1848 -1.0460
Slide 100973270089 PC15 t-test 5.44e-03 -0.743 -1.3400 -0.1456
Slide 100973270100 PC15 t-test 5.34e-03 -0.710 -1.2790 -0.1403
Slide 100973270128 PC15 t-test 1.44e-10 -1.714 -2.3081 -1.1190
Slide 100973270135 PC15 t-test 9.40e-05 -0.996 -1.5652 -0.4266
Slide 100973330044 PC15 t-test 1.38e-03 -0.871 -1.4787 -0.2626
Slide 101070190033 PC15 t-test 1.12e-03 -0.876 -1.4774 -0.2754
Slide 101070190115 PC15 t-test 1.55e-03 -0.882 -1.5055 -0.2595
Slide 200078650161 PC15 t-test 7.81e-04 0.860 0.2882 1.4323
Slide 200078650130 PC15 t-test 5.99e-03 0.745 0.1392 1.3512
Slide 200078650090 PC15 t-test 9.93e-03 0.725 0.0965 1.3538
Slide 200090270158 PC15 t-test 5.72e-04 0.880 0.3094 1.4510
Slide 200078650045 PC15 t-test 4.62e-03 0.723 0.1527 1.2942
Slide 200078650188 PC15 t-test 1.77e-03 0.886 0.2530 1.5199
Slide 200078650231 PC15 t-test 2.64e-03 0.805 0.2068 1.4033
Slide 200078650255 PC15 t-test 2.98e-07 1.395 0.7883 2.0022
Slide 200090270021 PC15 t-test 8.76e-03 0.822 0.1209 1.5225
Slide 200078650129 PC15 t-test 3.55e-11 1.833 1.2175 2.4487
Slide 200078650237 PC15 t-test 3.58e-03 0.776 0.1807 1.3721
sentrix_row 3 PC15 t-test 3.70e-04 0.215 0.0810 0.3484
AGE_all PC15 F-test 2.72e-06 22.139
Batch PC16 F-test 8.60e-04 11.143
Batch 1 PC16 t-test 1.34e-05 0.223 0.1116 0.3345
Batch 2 PC16 t-test 2.07e-03 -0.164 -0.2798 -0.0483
Slide PC16 F-test 1.57e-10 1.927
Slide 3998888042 PC16 t-test 1.97e-04 1.087 0.4351 1.7397
Slide 3998888068 PC16 t-test 4.63e-03 0.824 0.1736 1.4744
Slide 3998888071 PC16 t-test 4.70e-04 1.062 0.3838 1.7405
Slide 3998888080 PC16 t-test 1.24e-05 1.272 0.6226 1.9218
Slide 3998888081 PC16 t-test 4.56e-04 1.022 0.3708 1.6733
Slide 3998888083 PC16 t-test 8.27e-06 1.298 0.6484 1.9479
Slide 3998888086 PC16 t-test 2.10e-04 1.131 0.4496 1.8120
Slide 3998888087 PC16 t-test 4.51e-05 1.186 0.5370 1.8348
Slide 101070190016 PC16 t-test 4.72e-04 1.062 0.3834 1.7401
Slide 101070190031 PC16 t-test 1.25e-03 0.944 0.2905 1.5980
Slide 3998919043 PC16 t-test 8.88e-03 0.764 0.1113 1.4170
Slide 100973330065 PC16 t-test 2.44e-07 -1.605 -2.2981 -0.9119
Slide 100973270094 PC16 t-test 5.49e-03 -0.844 -1.5231 -0.1647
Slide 101070190115 PC16 t-test 4.18e-03 -0.913 -1.6248 -0.2006
Slide 200078650130 PC16 t-test 1.27e-04 -1.195 -1.8906 -0.4987
Slide 200078650040 PC16 t-test 6.05e-03 0.880 0.1634 1.5959
Slide 200078650123 PC16 t-test 1.77e-05 1.251 0.6008 1.9019
sentrix_row PC16 F-test 9.60e-05 5.199
sentrix_row 2 PC16 t-test 8.34e-05 0.268 0.1171 0.4198
sentrix_row 6 PC16 t-test 9.40e-06 -0.279 -0.4188 -0.1395
Sex PC16 F-test 2.20e-04 13.701
Sex M PC16 t-test 5.22e-05 0.207 0.0964 0.3185
Sex F PC16 t-test 4.10e-03 -0.154 -0.2713 -0.0368
AGE_all PC16 F-test 1.61e-04 14.297
Batch PC17 F-test 8.27e-40 182.704
Batch 1 PC17 t-test 1.54e-43 -0.729 -0.8406 -0.6167
Batch 2 PC17 t-test 3.09e-41 0.706 0.5946 0.8178
Sample.Set PC17 F-test 4.43e-04 7.752
Sample.Set Ian Hickie PC17 t-test 3.05e-05 0.621 0.2891 0.9538
Slide PC17 F-test 3.35e-49 4.026
Slide 3998888019 PC17 t-test 7.42e-05 -1.282 -2.0050 -0.5599
Slide 3998888067 PC17 t-test 9.40e-03 -0.879 -1.6350 -0.1224
Slide 3998888072 PC17 t-test 4.01e-04 -1.148 -1.8730 -0.4236
Slide 3998888109 PC17 t-test 2.13e-05 -1.439 -2.1949 -0.6835
Slide 3998888170 PC17 t-test 1.26e-11 -2.191 -2.9099 -1.4716
Slide 3998888171 PC17 t-test 3.44e-03 -0.989 -1.7454 -0.2335
Slide 3998888177 PC17 t-test 3.44e-09 -1.911 -2.6309 -1.1908
Slide 3998888180 PC17 t-test 5.78e-05 -1.301 -2.0240 -0.5790
Slide 3998888022 PC17 t-test 2.86e-03 -1.009 -1.7647 -0.2529
Slide 3998888024 PC17 t-test 2.52e-04 -1.185 -1.9079 -0.4619
Slide 3998888041 PC17 t-test 8.78e-03 -0.887 -1.6429 -0.1303
Slide 3998888059 PC17 t-test 4.63e-05 -1.443 -2.2341 -0.6522
Slide 3998888061 PC17 t-test 1.28e-06 -1.583 -2.3124 -0.8542
Slide 3998888071 PC17 t-test 2.34e-03 -1.029 -1.7851 -0.2735
Slide 3998888083 PC17 t-test 4.23e-03 -0.927 -1.6508 -0.2027
Slide 3998888086 PC17 t-test 3.92e-04 -1.199 -1.9537 -0.4435
Slide 3998888087 PC17 t-test 3.83e-03 -0.937 -1.6608 -0.2129
Slide 3998888176 PC17 t-test 3.19e-03 -0.955 -1.6793 -0.2314
Slide 3998888017 PC17 t-test 1.86e-03 -1.053 -1.8083 -0.2969
Slide 3998888023 PC17 t-test 5.99e-03 -0.930 -1.6860 -0.1737
Slide 3998888065 PC17 t-test 3.31e-03 -0.952 -1.6755 -0.2276
Slide 3998920007 PC17 t-test 9.12e-05 -1.269 -1.9926 -0.5447
Slide 100973270157 PC17 t-test 3.62e-04 1.159 0.4330 1.8840
Slide 100973330048 PC17 t-test 4.94e-03 0.911 0.1865 1.6347
Slide 100994770033 PC17 t-test 2.51e-03 1.027 0.2677 1.7872
Slide 101070190088 PC17 t-test 3.90e-03 0.976 0.2204 1.7324
Slide 200078650250 PC17 t-test 1.89e-03 1.006 0.2827 1.7302
Slide 200078650021 PC17 t-test 2.17e-03 1.146 0.3106 1.9809
Slide 200090280009 PC17 t-test 7.40e-05 1.404 0.6131 2.1954
Slide 200078650261 PC17 t-test 6.03e-03 0.890 0.1655 1.6138
Slide 200078650159 PC17 t-test 4.69e-03 0.956 0.2004 1.7125
Slide 200078650187 PC17 t-test 5.62e-03 0.937 0.1807 1.6930
Slide 200078650237 PC17 t-test 3.86e-03 0.979 0.2217 1.7363
sentrix_row PC17 F-test 1.31e-17 18.133
sentrix_row 1 PC17 t-test 1.60e-12 -0.502 -0.6586 -0.3450
sentrix_row 2 PC17 t-test 8.74e-07 -0.351 -0.5096 -0.1930
sentrix_row 5 PC17 t-test 5.63e-03 0.191 0.0379 0.3443
sentrix_row 6 PC17 t-test 2.31e-07 0.354 0.2025 0.5056
Sex PC17 F-test 1.15e-03 10.598
Sex M PC17 t-test 3.14e-04 -0.197 -0.3157 -0.0786
Sex F PC17 t-test 1.25e-03 0.172 0.0557 0.2890
AGE_all PC17 F-test 3.09e-03 8.774
Batch PC18 F-test 7.22e-61 291.358
Batch 1 PC18 t-test 8.28e-67 0.856 0.7522 0.9599
Batch 2 PC18 t-test 6.21e-57 -0.796 -0.9017 -0.6909
Sample.Set PC18 F-test 3.67e-06 12.600
Sample.Set George_Mellick PC18 t-test 8.00e-03 0.206 0.0436 0.3677
Sample.Set Ian Hickie PC18 t-test 9.35e-08 -0.749 -1.0608 -0.4364
Slide PC18 F-test 5.92e-49 4.014
Slide 3998888042 PC18 t-test 2.41e-03 0.926 0.2441 1.6080
Slide 3998888068 PC18 t-test 5.74e-04 1.051 0.3690 1.7320
Slide 3998888071 PC18 t-test 7.14e-03 0.860 0.1454 1.5742
Slide 3998888080 PC18 t-test 7.32e-03 0.819 0.1364 1.5011
Slide 3998888081 PC18 t-test 5.12e-04 1.060 0.3785 1.7414
Slide 3998888176 PC18 t-test 8.30e-03 0.806 0.1234 1.4882
Slide 101103430129 PC18 t-test 2.10e-04 1.135 0.4511 1.8180
Slide 3998920007 PC18 t-test 5.19e-03 -0.855 -1.5389 -0.1713
Slide 100973330054 PC18 t-test 5.61e-03 0.883 0.1704 1.5952
Slide 100973330065 PC18 t-test 4.69e-03 0.904 0.1894 1.6178
Slide 101070190049 PC18 t-test 8.88e-03 0.799 0.1164 1.4812
Slide 101070190070 PC18 t-test 5.11e-03 0.856 0.1729 1.5399
Slide 101070190090 PC18 t-test 3.15e-04 1.147 0.4360 1.8587
Slide 101070190150 PC18 t-test 5.72e-03 0.845 0.1616 1.5293
Slide 101130760005 PC18 t-test 6.15e-03 0.836 0.1541 1.5186
Slide 100973270085 PC18 t-test 1.12e-04 1.236 0.5217 1.9508
Slide 100973270129 PC18 t-test 1.46e-06 1.467 0.7880 2.1468
Slide 100973270135 PC18 t-test 1.76e-06 1.472 0.7849 2.1586
Slide 100973270157 PC18 t-test 1.65e-06 1.463 0.7823 2.1444
Slide 100973330003 PC18 t-test 6.21e-03 0.835 0.1530 1.5175
Slide 101070190122 PC18 t-test 9.81e-05 1.240 0.5294 1.9513
Slide 101070190123 PC18 t-test 2.47e-03 0.924 0.2420 1.6060
Slide 100994770033 PC18 t-test 3.33e-03 -0.936 -1.6478 -0.2234
Slide 200078650161 PC18 t-test 3.00e-03 -0.908 -1.5916 -0.2242
Slide 200078650003 PC18 t-test 1.38e-03 -1.019 -1.7308 -0.3070
Slide 200078650130 PC18 t-test 8.74e-04 -1.085 -1.8128 -0.3566
Slide 200078650055 PC18 t-test 4.03e-03 -0.919 -1.6324 -0.2047
Slide 200078650045 PC18 t-test 1.53e-03 -0.969 -1.6526 -0.2858
Slide 200078650170 PC18 t-test 6.37e-03 -0.833 -1.5151 -0.1505
Slide 200078650173 PC18 t-test 4.79e-03 -0.899 -1.6115 -0.1868
Slide 200078650231 PC18 t-test 2.17e-03 -0.977 -1.6891 -0.2650
Slide 200078650001 PC18 t-test 8.14e-05 -1.571 -2.4612 -0.6807
Slide 200078650246 PC18 t-test 7.63e-03 -0.814 -1.4968 -0.1321
Slide 200090270021 PC18 t-test 2.99e-03 -1.108 -1.9429 -0.2739
Slide 200090280040 PC18 t-test 6.21e-03 -0.835 -1.5176 -0.1530
Slide 200090280042 PC18 t-test 6.37e-03 -0.833 -1.5151 -0.1505
Slide 200078650041 PC18 t-test 1.22e-04 -1.227 -1.9395 -0.5138
sentrix_row 6 PC18 t-test 4.05e-03 0.189 0.0431 0.3351
Sex PC18 F-test 3.96e-04 12.596
Sex M PC18 t-test 1.03e-05 0.231 0.1176 0.3443
Sex F PC18 t-test 1.00e-03 -0.169 -0.2807 -0.0567
Batch PC19 F-test 4.92e-07 25.472
Batch 1 PC19 t-test 1.58e-07 0.269 0.1573 0.3801
Batch 2 PC19 t-test 2.07e-06 -0.242 -0.3526 -0.1313
Sample.Set PC19 F-test 5.90e-05 9.788
Sample.Set George_Mellick PC19 t-test 2.28e-03 -0.231 -0.3891 -0.0728
Sample.Set Martin_Kennedy PC19 t-test 1.63e-06 0.379 0.2033 0.5541
Slide PC19 F-test 7.91e-60 4.565
Slide 3998888067 PC19 t-test 4.25e-04 -1.136 -1.8557 -0.4159
Slide 3998888072 PC19 t-test 7.25e-03 -0.828 -1.5167 -0.1387
Slide 3998888170 PC19 t-test 1.96e-05 -1.314 -2.0012 -0.6272
Slide 3998888177 PC19 t-test 5.97e-04 -1.060 -1.7498 -0.3703
Slide 3998888180 PC19 t-test 3.43e-03 -0.902 -1.5906 -0.2131
Slide 3998888008 PC19 t-test 9.19e-04 -1.023 -1.7131 -0.3335
Slide 3998888022 PC19 t-test 7.80e-04 -1.081 -1.7996 -0.3622
Slide 101103430092 PC19 t-test 8.86e-03 0.846 0.1235 1.5683
Slide 3998919058 PC19 t-test 1.22e-04 -1.239 -1.9589 -0.5189
Slide 100973330047 PC19 t-test 1.59e-03 0.975 0.2850 1.6652
Slide 101070190061 PC19 t-test 1.22e-03 1.041 0.3219 1.7596
Slide 101070190062 PC19 t-test 4.96e-03 0.866 0.1771 1.5549
Slide 101070190063 PC19 t-test 6.25e-06 1.522 0.7704 2.2738
Slide 101070190070 PC19 t-test 5.89e-08 1.675 0.9867 2.3637
Slide 101070190090 PC19 t-test 1.55e-03 1.018 0.2994 1.7373
Slide 101070190150 PC19 t-test 2.37e-04 1.132 0.4445 1.8202
Slide 101130760005 PC19 t-test 4.17e-05 1.264 0.5756 1.9529
Slide 100973270128 PC19 t-test 3.37e-06 1.493 0.7761 2.2095
Slide 100973270167 PC19 t-test 1.20e-03 1.042 0.3235 1.7612
Slide 100973330003 PC19 t-test 1.09e-05 1.359 0.6695 2.0484
Slide 100973330037 PC19 t-test 7.25e-06 1.449 0.7282 2.1693
Slide 100973330051 PC19 t-test 2.28e-03 0.940 0.2516 1.6289
Slide 101070190089 PC19 t-test 1.51e-03 0.978 0.2893 1.6663
Slide 101070190123 PC19 t-test 1.09e-03 1.009 0.3187 1.6994
Slide 101070190148 PC19 t-test 8.79e-04 1.027 0.3374 1.7171
Slide 101070190017 PC19 t-test 4.32e-04 1.087 0.3973 1.7770
Slide 101130760004 PC19 t-test 4.48e-03 0.881 0.1884 1.5740
Slide 101103430114 PC19 t-test 7.95e-03 0.898 0.1417 1.6543
Slide 200078650003 PC19 t-test 3.24e-03 -0.948 -1.6667 -0.2283
Slide 200078650250 PC19 t-test 2.28e-04 -1.135 -1.8232 -0.4475
Slide 200078650021 PC19 t-test 4.35e-03 -1.014 -1.8089 -0.2192
Slide 200078650066 PC19 t-test 7.84e-03 -0.856 -1.5754 -0.1364
Slide 200078650001 PC19 t-test 5.50e-03 -1.119 -2.0198 -0.2180
Slide 200090270021 PC19 t-test 2.96e-04 -1.364 -2.2056 -0.5221
Slide 200090280042 PC19 t-test 6.87e-03 -0.833 -1.5223 -0.1442
Slide 200078650109 PC19 t-test 1.34e-03 -1.035 -1.7561 -0.3143
Slide 200078650159 PC19 t-test 6.59e-03 -0.874 -1.5939 -0.1550
Slide 200078650224 PC19 t-test 3.45e-03 -0.904 -1.5948 -0.2133
sentrix_row PC19 F-test 3.63e-19 19.686
sentrix_row 1 PC19 t-test 1.43e-16 -0.545 -0.6906 -0.3999
sentrix_row 2 PC19 t-test 9.58e-03 -0.176 -0.3267 -0.0251
sentrix_row 5 PC19 t-test 2.41e-06 0.312 0.1652 0.4580
sentrix_row 6 PC19 t-test 6.41e-07 0.328 0.1823 0.4744
Sex PC19 F-test 1.55e-03 10.043
Sex M PC19 t-test 7.31e-03 -0.141 -0.2541 -0.0269
Sex F PC19 t-test 7.08e-04 0.171 0.0608 0.2813
AGE_all PC19 F-test 2.64e-03 9.062
Batch PC20 F-test 1.14e-05 19.361
Batch 1 PC20 t-test 1.47e-07 0.241 0.1412 0.3401
Batch 2 PC20 t-test 1.66e-05 -0.207 -0.3111 -0.1025
Sample.Set PC20 F-test 2.37e-03 6.062
Sample.Set George_Mellick PC20 t-test 6.18e-05 0.281 0.1348 0.4277
Sample.Set Martin_Kennedy PC20 t-test 1.84e-03 -0.223 -0.3820 -0.0636
Slide PC20 F-test 1.60e-16 2.298
Slide 3998888072 PC20 t-test 4.13e-04 0.967 0.3554 1.5781
Slide 3998888170 PC20 t-test 7.82e-07 1.354 0.7428 1.9654
Slide 3998888171 PC20 t-test 1.51e-07 1.495 0.8603 2.1292
Slide 3998888177 PC20 t-test 3.93e-06 1.259 0.6504 1.8676
Slide 3998888180 PC20 t-test 6.25e-05 1.095 0.4844 1.7059
Slide 3998888008 PC20 t-test 8.91e-04 0.908 0.2975 1.5181
Slide 3998888041 PC20 t-test 7.26e-03 0.768 0.1286 1.4077
Slide 3998888045 PC20 t-test 1.76e-03 0.892 0.2549 1.5299
Slide 3998888023 PC20 t-test 3.29e-03 0.839 0.2010 1.4764
Slide 100973330065 PC20 t-test 1.46e-03 -0.910 -1.5487 -0.2713
Slide 101070190049 PC20 t-test 2.97e-03 -0.816 -1.4293 -0.2021
Slide 101070190090 PC20 t-test 1.77e-07 -1.490 -2.1264 -0.8542
Slide 101070190150 PC20 t-test 4.66e-04 -0.956 -1.5660 -0.3458
Slide 101130760005 PC20 t-test 2.86e-04 -0.993 -1.6046 -0.3816
Slide 200090280005 PC20 t-test 1.25e-03 -0.884 -1.4950 -0.2720
Slide 200078650041 PC20 t-test 9.87e-03 0.737 0.0985 1.3746
Slide 200078650232 PC20 t-test 7.20e-04 -0.929 -1.5420 -0.3152
sentrix_row PC20 F-test 3.06e-12 12.781
sentrix_row 1 PC20 t-test 3.09e-14 0.455 0.3226 0.5866
sentrix_row 5 PC20 t-test 1.33e-06 -0.290 -0.4229 -0.1572
Sex PC20 F-test 2.36e-04 13.570
Sex M PC20 t-test 2.24e-04 -0.176 -0.2797 -0.0728
Sex F PC20 t-test 7.21e-06 0.209 0.1074 0.3106

R session information

## R version 3.2.2 (2015-08-14)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS release 6.2 (Final)
## 
## locale:
##  [1] LC_CTYPE=en_US.iso885915       LC_NUMERIC=C                  
##  [3] LC_TIME=en_US.iso885915        LC_COLLATE=en_US.iso885915    
##  [5] LC_MONETARY=en_US.iso885915    LC_MESSAGES=en_US.iso885915   
##  [7] LC_PAPER=en_US.iso885915       LC_NAME=C                     
##  [9] LC_ADDRESS=C                   LC_TELEPHONE=C                
## [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C           
## 
## attached base packages:
## [1] parallel  stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] meffil_1.0.0       quadprog_1.5-5     DNAcopy_1.44.0    
##  [4] fastICA_1.2-0      lme4_1.1-12        Matrix_1.2-2      
##  [7] multcomp_1.4-6     TH.data_1.0-7      survival_2.39-5   
## [10] mvtnorm_1.0-5      matrixStats_0.50.2 markdown_0.7.7    
## [13] gridExtra_2.2.1    Cairo_1.5-9        knitr_1.13        
## [16] reshape2_1.4.1     plyr_1.8.4         ggplot2_2.1.0     
## [19] limma_3.26.9       MASS_7.3-43        illuminaio_0.12.0 
## [22] devtools_1.12.0   
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_0.12.5      highr_0.6        formatR_1.4      nloptr_1.0.4    
##  [5] tools_3.2.2      digest_0.6.9     base64_2.0       evaluate_0.9    
##  [9] memoise_1.0.0    gtable_0.2.0     nlme_3.1-128     lattice_0.20-33 
## [13] withr_1.0.2      stringr_1.0.0    grid_3.2.2       minqa_1.2.4     
## [17] magrittr_1.5     scales_0.4.0     codetools_0.2-14 splines_3.2.2   
## [21] colorspace_1.2-6 labeling_0.3     sandwich_2.3-4   stringi_1.1.1   
## [25] openssl_0.9.3    munsell_0.4.3    zoo_1.7-13