## $variables
## [1] "Batch" "Sample.Set" "Slide" "sentrix_col" "sentrix_row"
## [6] "Sex" "AGE_all"
##
## $control.pcs
## [1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
##
## $batch.pcs
## [1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
##
## $batch.threshold
## [1] 0.01
##
## $colours
## NULL
The variance captured by each principal component.
The following plots show the first 3 principal components of the control matrix colored by batch variables. Batch variables with more than 10 levels are omitted.
Principal components of the control probes were regressed against batch variables. Shown are the \(-log_{10}\) p-values for these regressions. The horizontal dotted line denotes \(p = 0.05\) in log-scale.
The following plots show regression coefficients when each principal component is regressed against each batch variable level along with 95% confidence intervals. Cases significantly different from zero are coloured red (p < 0.01, t-test).
| batch.variable | batch.value | principal.component | test | p.value | estimate | lower | upper |
|---|---|---|---|---|---|---|---|
| Sample.Set | PC1 | F-test | 9.80e-09 | 18.6225 | |||
| Sample.Set | George_Mellick | PC1 | t-test | 1.03e-07 | -1.6732 | -2.32841 | -1.01791 |
| Sample.Set | Martin_Kennedy | PC1 | t-test | 7.91e-10 | 2.1334 | 1.36401 | 2.90288 |
| Slide | PC1 | F-test | 6.39e-106 | 6.9587 | |||
| Slide | 3998888177 | PC1 | t-test | 2.28e-04 | -5.0566 | -8.12061 | -1.99258 |
| Slide | 3998888180 | PC1 | t-test | 3.29e-04 | -4.9274 | -7.99193 | -1.86278 |
| Slide | 3998888008 | PC1 | t-test | 1.11e-06 | 6.6728 | 3.61705 | 9.72864 |
| Slide | 3998888022 | PC1 | t-test | 1.19e-03 | 4.6442 | 1.44214 | 7.84632 |
| Slide | 3998888041 | PC1 | t-test | 1.92e-03 | 4.4472 | 1.24439 | 7.65005 |
| Slide | 3998888042 | PC1 | t-test | 5.83e-06 | 6.2255 | 3.16076 | 9.29021 |
| Slide | 3998888045 | PC1 | t-test | 2.04e-03 | 4.4218 | 1.21890 | 7.62475 |
| Slide | 3998888068 | PC1 | t-test | 3.91e-09 | 8.0784 | 5.02290 | 11.13397 |
| Slide | 3998888071 | PC1 | t-test | 9.60e-03 | 3.7136 | 0.50834 | 6.91895 |
| Slide | 3998888080 | PC1 | t-test | 2.82e-03 | 4.1004 | 1.03262 | 7.16823 |
| Slide | 3998888083 | PC1 | t-test | 4.34e-06 | 6.2971 | 3.23919 | 9.35501 |
| Slide | 3998888086 | PC1 | t-test | 1.59e-03 | 4.5248 | 1.32223 | 7.72731 |
| Slide | 101070190050 | PC1 | t-test | 1.25e-03 | -4.4283 | -7.49487 | -1.36168 |
| Slide | 101103430091 | PC1 | t-test | 5.78e-03 | -3.7896 | -6.85848 | -0.72075 |
| Slide | 101103430120 | PC1 | t-test | 7.66e-05 | -5.6641 | -8.86185 | -2.46639 |
| Slide | 101103430129 | PC1 | t-test | 3.86e-06 | -6.3305 | -9.38825 | -3.27279 |
| Slide | 3998888017 | PC1 | t-test | 1.56e-04 | 5.4155 | 2.21662 | 8.61436 |
| Slide | 3998888065 | PC1 | t-test | 1.87e-03 | 4.2686 | 1.20143 | 7.33582 |
| Slide | 3998888069 | PC1 | t-test | 3.77e-03 | 3.9769 | 0.90868 | 7.04515 |
| Slide | 100973270155 | PC1 | t-test | 5.00e-03 | 4.2197 | 0.85982 | 7.57959 |
| Slide | 100973330088 | PC1 | t-test | 8.39e-03 | -3.6199 | -6.68931 | -0.55050 |
| Slide | 100973330048 | PC1 | t-test | 4.56e-03 | -3.8945 | -6.96297 | -0.82594 |
| Slide | 100973330051 | PC1 | t-test | 1.26e-03 | -4.4249 | -7.49155 | -1.35833 |
| Slide | 101070190109 | PC1 | t-test | 5.81e-03 | 3.9548 | 0.75027 | 7.15935 |
| Slide | 101070190071 | PC1 | t-test | 2.85e-04 | 4.9789 | 1.91460 | 8.04330 |
| Slide | 101103430113 | PC1 | t-test | 1.08e-03 | -4.6848 | -7.88669 | -1.48283 |
| Slide | 101103430114 | PC1 | t-test | 3.85e-03 | -4.3439 | -7.70334 | -0.98441 |
| Slide | 101103430118 | PC1 | t-test | 1.54e-03 | -4.3481 | -7.41501 | -1.28121 |
| Slide | 200078650218 | PC1 | t-test | 4.58e-05 | -5.8367 | -9.03359 | -2.63978 |
| Slide | 200078650234 | PC1 | t-test | 6.69e-06 | -6.1728 | -9.23143 | -3.11426 |
| Slide | 200078650257 | PC1 | t-test | 1.72e-07 | -7.1585 | -10.21140 | -4.10564 |
| Slide | 200078650003 | PC1 | t-test | 1.10e-05 | 6.2948 | 3.10024 | 9.48943 |
| Slide | 200078650130 | PC1 | t-test | 5.61e-03 | 3.9712 | 0.76671 | 7.17569 |
| Slide | 200078650021 | PC1 | t-test | 7.22e-03 | 4.2561 | 0.71473 | 7.79749 |
| Slide | 200078650088 | PC1 | t-test | 6.91e-03 | 3.8726 | 0.66780 | 7.07742 |
| Slide | 200090270158 | PC1 | t-test | 2.73e-03 | -4.1135 | -7.18125 | -1.04573 |
| Slide | 200078650173 | PC1 | t-test | 5.26e-05 | 5.7912 | 2.59412 | 8.98837 |
| Slide | 200090280040 | PC1 | t-test | 1.93e-03 | -4.2571 | -7.32430 | -1.18983 |
| Slide | 200090280042 | PC1 | t-test | 2.86e-04 | -4.9775 | -8.04184 | -1.91312 |
| Slide | 200078650112 | PC1 | t-test | 8.64e-03 | -3.9478 | -7.30856 | -0.58703 |
| Slide | 200078650123 | PC1 | t-test | 9.87e-04 | -4.5210 | -7.58726 | -1.45479 |
| Slide | 200078650258 | PC1 | t-test | 1.02e-03 | -4.7059 | -7.90774 | -1.50404 |
| sentrix_row | PC1 | F-test | 2.65e-226 | 283.1902 | |||
| sentrix_row | 1 | PC1 | t-test | 7.10e-111 | -6.1348 | -6.70429 | -5.56541 |
| sentrix_row | 2 | PC1 | t-test | 1.39e-20 | -2.7547 | -3.40564 | -2.10370 |
| sentrix_row | 4 | PC1 | t-test | 6.52e-04 | 1.0061 | 0.35108 | 1.66119 |
| sentrix_row | 5 | PC1 | t-test | 4.02e-29 | 3.1955 | 2.57212 | 3.81890 |
| sentrix_row | 6 | PC1 | t-test | 7.82e-78 | 5.1943 | 4.60464 | 5.78404 |
| Batch | PC2 | F-test | 6.16e-41 | 188.3769 | |||
| Batch | 1 | PC2 | t-test | 2.67e-41 | -1.4989 | -1.73604 | -1.26181 |
| Batch | 2 | PC2 | t-test | 8.16e-37 | 1.3747 | 1.14360 | 1.60576 |
| Sample.Set | PC2 | F-test | 8.90e-05 | 9.3731 | |||
| Sample.Set | George_Mellick | PC2 | t-test | 1.36e-06 | -0.7903 | -1.13140 | -0.44920 |
| Sample.Set | Martin_Kennedy | PC2 | t-test | 1.46e-04 | 0.6685 | 0.27709 | 1.05991 |
| Slide | PC2 | F-test | 3.04e-240 | 15.3707 | |||
| Slide | 3998888170 | PC2 | t-test | 4.07e-03 | -1.9840 | -3.52756 | -0.44041 |
| Slide | 3998888177 | PC2 | t-test | 6.86e-08 | -3.7158 | -5.25075 | -2.18076 |
| Slide | 3998888180 | PC2 | t-test | 5.58e-14 | -5.1826 | -6.71338 | -3.65182 |
| Slide | 3998888059 | PC2 | t-test | 1.68e-09 | -4.5481 | -6.22866 | -2.86755 |
| Slide | 3998888061 | PC2 | t-test | 2.73e-13 | -5.0656 | -6.60561 | -3.52556 |
| Slide | 3998888087 | PC2 | t-test | 4.25e-04 | -2.4326 | -3.97443 | -0.89072 |
| Slide | 3998888176 | PC2 | t-test | 2.55e-06 | -3.2504 | -4.79173 | -1.70907 |
| Slide | 101103430091 | PC2 | t-test | 4.95e-03 | -1.9449 | -3.49144 | -0.39828 |
| Slide | 101103430120 | PC2 | t-test | 8.45e-12 | -4.9011 | -6.49649 | -3.30580 |
| Slide | 101103430129 | PC2 | t-test | 4.18e-13 | -5.0222 | -6.56131 | -3.48310 |
| Slide | 3998888023 | PC2 | t-test | 1.41e-03 | -2.3022 | -3.91319 | -0.69124 |
| Slide | 3998919138 | PC2 | t-test | 1.32e-07 | -3.6426 | -5.18135 | -2.10381 |
| Slide | 3998920007 | PC2 | t-test | 1.75e-08 | -3.8965 | -5.43689 | -2.35603 |
| Slide | 100973270162 | PC2 | t-test | 4.49e-03 | -1.9626 | -3.50620 | -0.41891 |
| Slide | 100973330047 | PC2 | t-test | 5.19e-07 | -3.4714 | -5.01349 | -1.92921 |
| Slide | 100973330065 | PC2 | t-test | 4.16e-03 | -2.0667 | -3.67853 | -0.45488 |
| Slide | 100973270085 | PC2 | t-test | 2.21e-03 | -2.2073 | -3.81862 | -0.59596 |
| Slide | 100973270089 | PC2 | t-test | 2.37e-06 | -3.3969 | -5.00271 | -1.79115 |
| Slide | 100973270094 | PC2 | t-test | 2.88e-06 | -3.3686 | -4.97458 | -1.76270 |
| Slide | 100973270100 | PC2 | t-test | 2.05e-03 | -2.1293 | -3.67236 | -0.58625 |
| Slide | 101070190089 | PC2 | t-test | 5.51e-03 | 1.9174 | 0.37357 | 3.46117 |
| Slide | 101070190097 | PC2 | t-test | 1.34e-03 | 2.4239 | 0.73478 | 4.11307 |
| Slide | 101070190098 | PC2 | t-test | 9.18e-03 | 1.7998 | 0.25560 | 3.34396 |
| Slide | 101070190099 | PC2 | t-test | 8.69e-03 | 1.8126 | 0.26845 | 3.35673 |
| Slide | 101070190110 | PC2 | t-test | 8.29e-03 | 1.8239 | 0.27975 | 3.36796 |
| Slide | 101070190122 | PC2 | t-test | 2.93e-04 | 2.6100 | 1.00026 | 4.21969 |
| Slide | 101070190033 | PC2 | t-test | 8.69e-04 | 2.4005 | 0.78990 | 4.01108 |
| Slide | 101070190051 | PC2 | t-test | 2.13e-03 | 2.2143 | 0.60300 | 3.82561 |
| Slide | 101070190109 | PC2 | t-test | 2.14e-12 | 5.0488 | 3.45136 | 6.64623 |
| Slide | 101070190111 | PC2 | t-test | 1.57e-07 | 3.9552 | 2.27378 | 5.63656 |
| Slide | 101070190115 | PC2 | t-test | 2.79e-03 | 2.2610 | 0.57123 | 3.95073 |
| Slide | 101130760004 | PC2 | t-test | 4.96e-05 | 2.7995 | 1.25929 | 4.33967 |
| Slide | 101070190071 | PC2 | t-test | 1.16e-03 | 2.2428 | 0.70018 | 3.78543 |
| Slide | 101070190088 | PC2 | t-test | 1.14e-03 | 2.3459 | 0.73509 | 3.95670 |
| Slide | 101070190121 | PC2 | t-test | 6.55e-07 | 3.4281 | 1.89135 | 4.96492 |
| Slide | 101070190137 | PC2 | t-test | 7.11e-06 | 3.5727 | 1.79732 | 5.34808 |
| Slide | 200078650234 | PC2 | t-test | 4.53e-05 | -2.8202 | -4.36361 | -1.27669 |
| Slide | 200078650257 | PC2 | t-test | 3.73e-05 | -2.8449 | -4.38490 | -1.30497 |
| Slide | 200078650086 | PC2 | t-test | 2.01e-03 | 2.2269 | 0.61565 | 3.83816 |
| Slide | 200078650115 | PC2 | t-test | 7.91e-03 | 1.9158 | 0.30346 | 3.52811 |
| Slide | 200078650130 | PC2 | t-test | 3.90e-05 | 2.9631 | 1.35502 | 4.57118 |
| Slide | 200078650136 | PC2 | t-test | 2.27e-03 | 2.2011 | 0.58975 | 3.81245 |
| Slide | 200078650021 | PC2 | t-test | 9.82e-03 | 2.0580 | 0.27618 | 3.83976 |
| Slide | 200078650055 | PC2 | t-test | 2.75e-04 | 2.6216 | 1.01198 | 4.23132 |
| Slide | 200078650090 | PC2 | t-test | 1.99e-05 | 3.2214 | 1.53579 | 4.90694 |
| Slide | 200090270100 | PC2 | t-test | 5.94e-04 | 2.3710 | 0.82884 | 3.91307 |
| Slide | 200090270102 | PC2 | t-test | 5.44e-04 | 2.4927 | 0.88246 | 4.10289 |
| Slide | 200090270152 | PC2 | t-test | 7.37e-05 | 2.9946 | 1.30792 | 4.68131 |
| Slide | 200090280009 | PC2 | t-test | 2.24e-03 | 2.3108 | 0.62119 | 4.00033 |
| Slide | 200078650085 | PC2 | t-test | 1.69e-03 | 2.3739 | 0.68459 | 4.06326 |
| Slide | 200078650206 | PC2 | t-test | 7.14e-03 | 1.9405 | 0.32824 | 3.55274 |
| Slide | 200078650001 | PC2 | t-test | 1.25e-05 | -3.9403 | -5.95295 | -1.92762 |
| Slide | 200078650246 | PC2 | t-test | 9.55e-03 | 1.7904 | 0.24623 | 3.33464 |
| Slide | 200090270021 | PC2 | t-test | 2.70e-05 | -3.5421 | -5.42595 | -1.65817 |
| Slide | 200078650089 | PC2 | t-test | 7.21e-03 | -2.0321 | -3.72259 | -0.34153 |
| Slide | 200078650112 | PC2 | t-test | 4.10e-06 | -3.4773 | -5.16156 | -1.79313 |
| Slide | 200078650187 | PC2 | t-test | 2.09e-05 | -3.0649 | -4.67244 | -1.45730 |
| Slide | 200078650258 | PC2 | t-test | 5.18e-05 | -2.9156 | -4.52396 | -1.30734 |
| sentrix_row | PC2 | F-test | 1.43e-79 | 83.7011 | |||
| sentrix_row | 1 | PC2 | t-test | 4.73e-58 | 2.2913 | 1.98513 | 2.59746 |
| sentrix_row | 2 | PC2 | t-test | 2.85e-06 | 0.7040 | 0.37060 | 1.03732 |
| sentrix_row | 4 | PC2 | t-test | 1.12e-11 | -1.0101 | -1.33871 | -0.68146 |
| sentrix_row | 5 | PC2 | t-test | 3.25e-14 | -1.1222 | -1.44829 | -0.79610 |
| sentrix_row | 6 | PC2 | t-test | 3.56e-17 | -1.2292 | -1.55026 | -0.90818 |
| Batch | PC3 | F-test | 7.93e-133 | 708.4317 | |||
| Batch | 1 | PC3 | t-test | 9.24e-128 | -1.7554 | -1.90229 | -1.60849 |
| Batch | 2 | PC3 | t-test | 4.10e-138 | 1.9632 | 1.80623 | 2.12013 |
| Sample.Set | PC3 | F-test | 5.92e-03 | 5.1440 | |||
| Sample.Set | George_Mellick | PC3 | t-test | 8.23e-04 | 0.4096 | 0.15393 | 0.66535 |
| Slide | PC3 | F-test | 0.00e+00 | 25.3366 | |||
| Slide | 3998888019 | PC3 | t-test | 8.00e-03 | -1.2905 | -2.37824 | -0.20283 |
| Slide | 3998888109 | PC3 | t-test | 7.14e-04 | -1.7186 | -2.85301 | -0.58415 |
| Slide | 3998888170 | PC3 | t-test | 2.74e-04 | -1.7690 | -2.85488 | -0.68312 |
| Slide | 3998888171 | PC3 | t-test | 2.25e-05 | -2.1504 | -3.28281 | -1.01795 |
| Slide | 3998888177 | PC3 | t-test | 1.31e-07 | -2.5608 | -3.64237 | -1.47918 |
| Slide | 3998888180 | PC3 | t-test | 1.32e-04 | -1.8580 | -2.94346 | -0.77251 |
| Slide | 3998888024 | PC3 | t-test | 8.75e-04 | -1.6186 | -2.70512 | -0.53209 |
| Slide | 3998888041 | PC3 | t-test | 1.21e-04 | -1.9517 | -3.08508 | -0.81827 |
| Slide | 3998888042 | PC3 | t-test | 2.48e-03 | -1.4721 | -2.55915 | -0.38499 |
| Slide | 3998888045 | PC3 | t-test | 3.75e-03 | -1.4726 | -2.60799 | -0.33727 |
| Slide | 3998888071 | PC3 | t-test | 3.04e-03 | -1.5056 | -2.64088 | -0.37039 |
| Slide | 3998888080 | PC3 | t-test | 2.47e-03 | -1.4726 | -2.55971 | -0.38556 |
| Slide | 3998888081 | PC3 | t-test | 1.20e-04 | -1.8701 | -2.95548 | -0.78464 |
| Slide | 3998888086 | PC3 | t-test | 2.98e-03 | -1.5087 | -2.64398 | -0.37351 |
| Slide | 3998888087 | PC3 | t-test | 2.24e-06 | -2.2971 | -3.38029 | -1.21388 |
| Slide | 3998919138 | PC3 | t-test | 1.53e-05 | -2.1007 | -3.18501 | -1.01645 |
| Slide | 3998920007 | PC3 | t-test | 2.75e-05 | -2.0378 | -3.12239 | -0.95318 |
| Slide | 100973270162 | PC3 | t-test | 2.28e-03 | 1.4840 | 0.39694 | 2.57101 |
| Slide | 100973330047 | PC3 | t-test | 4.09e-03 | 1.3967 | 0.30939 | 2.48409 |
| Slide | 100973330088 | PC3 | t-test | 1.02e-07 | -2.5825 | -3.66400 | -1.50108 |
| Slide | 101070190049 | PC3 | t-test | 3.80e-04 | -1.7281 | -2.81412 | -0.64200 |
| Slide | 101070190061 | PC3 | t-test | 1.32e-07 | -2.6736 | -3.80304 | -1.54422 |
| Slide | 101070190062 | PC3 | t-test | 8.60e-03 | -1.2787 | -2.36640 | -0.19092 |
| Slide | 101070190063 | PC3 | t-test | 7.14e-08 | -2.8619 | -4.04572 | -1.67800 |
| Slide | 101070190070 | PC3 | t-test | 4.90e-05 | -1.9733 | -3.05821 | -0.88835 |
| Slide | 101070190090 | PC3 | t-test | 4.63e-08 | -2.7684 | -3.89717 | -1.63959 |
| Slide | 101070190150 | PC3 | t-test | 1.29e-06 | -2.3509 | -3.43380 | -1.26802 |
| Slide | 101130760005 | PC3 | t-test | 8.11e-05 | -1.9157 | -3.00086 | -0.83045 |
| Slide | 100973270089 | PC3 | t-test | 1.42e-11 | 3.4350 | 2.30446 | 4.56557 |
| Slide | 100973270094 | PC3 | t-test | 2.22e-06 | 2.3994 | 1.26837 | 3.53052 |
| Slide | 100973270100 | PC3 | t-test | 2.36e-04 | 1.7878 | 0.70198 | 2.87357 |
| Slide | 100973270129 | PC3 | t-test | 2.11e-03 | -1.4956 | -2.58257 | -0.40859 |
| Slide | 100973270135 | PC3 | t-test | 4.52e-04 | -1.7057 | -2.79181 | -0.61950 |
| Slide | 100973330003 | PC3 | t-test | 2.18e-03 | -1.4909 | -2.57793 | -0.40391 |
| Slide | 100973330051 | PC3 | t-test | 6.60e-03 | -1.3218 | -2.40939 | -0.23419 |
| Slide | 101070190123 | PC3 | t-test | 1.26e-04 | -1.8641 | -2.94953 | -0.77863 |
| Slide | 101070190148 | PC3 | t-test | 9.13e-06 | -2.1553 | -3.23933 | -1.07135 |
| Slide | 101070190017 | PC3 | t-test | 1.18e-09 | 2.9614 | 1.87760 | 4.04520 |
| Slide | 101070190018 | PC3 | t-test | 4.43e-04 | 1.7837 | 0.64955 | 2.91786 |
| Slide | 101070190033 | PC3 | t-test | 6.10e-05 | 2.0403 | 0.90411 | 3.17655 |
| Slide | 100994770033 | PC3 | t-test | 8.53e-23 | 5.0423 | 3.90927 | 6.17530 |
| Slide | 101070190038 | PC3 | t-test | 5.84e-03 | 1.4685 | 0.27781 | 2.65928 |
| Slide | 101070190071 | PC3 | t-test | 7.07e-05 | 1.9315 | 0.84638 | 3.01664 |
| Slide | 101103430112 | PC3 | t-test | 7.14e-06 | 2.1857 | 1.09946 | 3.27200 |
| Slide | 200078650003 | PC3 | t-test | 4.07e-26 | 5.4061 | 4.27900 | 6.53312 |
| Slide | 200078650086 | PC3 | t-test | 9.23e-03 | 1.3229 | 0.18700 | 2.45872 |
| Slide | 200078650115 | PC3 | t-test | 2.97e-05 | 2.1190 | 0.98640 | 3.25158 |
| Slide | 200078650130 | PC3 | t-test | 7.41e-04 | 1.7134 | 0.57892 | 2.84782 |
| Slide | 200078650250 | PC3 | t-test | 1.52e-06 | 2.3349 | 1.25196 | 3.41793 |
| Slide | 200078650021 | PC3 | t-test | 1.06e-05 | 2.4760 | 1.22123 | 3.73068 |
| Slide | 200078650040 | PC3 | t-test | 1.39e-07 | 2.8108 | 1.62123 | 4.00044 |
| Slide | 200078650055 | PC3 | t-test | 2.77e-05 | 2.1268 | 0.99426 | 3.25936 |
| Slide | 200078650088 | PC3 | t-test | 1.40e-04 | 1.9332 | 0.79970 | 3.06668 |
| Slide | 200078650090 | PC3 | t-test | 7.96e-10 | 3.2800 | 2.09198 | 4.46806 |
| Slide | 200090280005 | PC3 | t-test | 1.83e-05 | 2.0817 | 0.99734 | 3.16610 |
| Slide | 200078650045 | PC3 | t-test | 3.42e-11 | 3.2180 | 2.13805 | 4.29789 |
| Slide | 200078650152 | PC3 | t-test | 4.51e-09 | 2.9774 | 1.84666 | 4.10804 |
| Slide | 200078650170 | PC3 | t-test | 2.73e-04 | 1.7697 | 0.68382 | 2.85557 |
| Slide | 200078650173 | PC3 | t-test | 2.74e-06 | 2.3781 | 1.24694 | 3.50934 |
| Slide | 200078650188 | PC3 | t-test | 6.16e-04 | 1.8234 | 0.63400 | 3.01282 |
| Slide | 200078650210 | PC3 | t-test | 1.30e-03 | 1.7127 | 0.52288 | 2.90259 |
| Slide | 200078650001 | PC3 | t-test | 9.20e-17 | 5.3179 | 3.90012 | 6.73571 |
| Slide | 200078650118 | PC3 | t-test | 1.08e-03 | 1.6596 | 0.52494 | 2.79427 |
| Slide | 200078650189 | PC3 | t-test | 8.80e-05 | 1.9062 | 0.82092 | 2.99142 |
| Slide | 200090270021 | PC3 | t-test | 6.59e-18 | 5.1668 | 3.83930 | 6.49422 |
| Slide | 200090280029 | PC3 | t-test | 1.66e-06 | 2.4291 | 1.29815 | 3.55997 |
| Slide | 200090280040 | PC3 | t-test | 6.74e-03 | 1.3184 | 0.23080 | 2.40603 |
| Slide | 200078650089 | PC3 | t-test | 2.28e-03 | 1.6248 | 0.43460 | 2.81498 |
| sentrix_col | PC3 | F-test | 5.65e-04 | 11.9275 | |||
| sentrix_col | 1 | PC3 | t-test | 3.46e-06 | 0.3856 | 0.20523 | 0.56595 |
| sentrix_row | PC3 | F-test | 5.74e-03 | 3.2962 | |||
| sentrix_row | 1 | PC3 | t-test | 1.59e-04 | 0.3937 | 0.16246 | 0.62494 |
| sentrix_row | 2 | PC3 | t-test | 8.69e-05 | 0.4283 | 0.18620 | 0.67049 |
| Batch | PC4 | F-test | 2.29e-09 | 36.0584 | |||
| Batch | 1 | PC4 | t-test | 7.77e-17 | -0.5547 | -0.69852 | -0.41097 |
| Batch | 2 | PC4 | t-test | 2.41e-05 | 0.2809 | 0.13649 | 0.42533 |
| Sample.Set | PC4 | F-test | 4.42e-12 | 26.5100 | |||
| Sample.Set | George_Mellick | PC4 | t-test | 4.91e-11 | -0.6737 | -0.88683 | -0.46052 |
| Sample.Set | Ian Hickie | PC4 | t-test | 2.86e-08 | 0.9653 | 0.57813 | 1.35246 |
| Sample.Set | Martin_Kennedy | PC4 | t-test | 1.95e-04 | 0.3587 | 0.14463 | 0.57271 |
| Slide | PC4 | F-test | 2.06e-122 | 7.8597 | |||
| Slide | 3998888019 | PC4 | t-test | 3.94e-03 | -1.0917 | -1.93801 | -0.24530 |
| Slide | 3998888180 | PC4 | t-test | 4.19e-03 | 1.0845 | 0.23809 | 1.93085 |
| Slide | 3998888008 | PC4 | t-test | 1.37e-05 | -1.6445 | -2.48845 | -0.80062 |
| Slide | 3998888022 | PC4 | t-test | 5.91e-07 | -1.9957 | -2.88674 | -1.10464 |
| Slide | 3998888024 | PC4 | t-test | 8.63e-03 | -0.9948 | -1.84147 | -0.14811 |
| Slide | 3998888042 | PC4 | t-test | 5.24e-03 | -1.0630 | -1.91397 | -0.21197 |
| Slide | 3998888045 | PC4 | t-test | 5.05e-03 | -1.1087 | -1.99260 | -0.22485 |
| Slide | 3998888059 | PC4 | t-test | 2.43e-03 | 1.2571 | 0.33064 | 2.18353 |
| Slide | 3998888083 | PC4 | t-test | 1.43e-03 | 1.2076 | 0.36165 | 2.05351 |
| Slide | 3998888087 | PC4 | t-test | 4.72e-06 | 1.7304 | 0.88692 | 2.57381 |
| Slide | 3998888176 | PC4 | t-test | 4.56e-06 | 1.7331 | 0.88965 | 2.57650 |
| Slide | 101103430091 | PC4 | t-test | 8.38e-03 | -1.0030 | -1.85337 | -0.15262 |
| Slide | 101103430120 | PC4 | t-test | 2.13e-04 | 1.4634 | 0.58095 | 2.34588 |
| Slide | 101103430129 | PC4 | t-test | 8.43e-07 | 1.8612 | 1.01852 | 2.70388 |
| Slide | 3998919138 | PC4 | t-test | 8.63e-04 | 1.2612 | 0.41553 | 2.10696 |
| Slide | 100973270162 | PC4 | t-test | 8.63e-04 | 1.2613 | 0.41559 | 2.10701 |
| Slide | 100973330047 | PC4 | t-test | 1.51e-03 | 1.2011 | 0.35511 | 2.04701 |
| Slide | 101070190049 | PC4 | t-test | 2.58e-03 | -1.1414 | -1.98758 | -0.29522 |
| Slide | 100973270083 | PC4 | t-test | 2.29e-04 | -1.3979 | -2.24504 | -0.55067 |
| Slide | 100973270128 | PC4 | t-test | 7.78e-15 | -3.1051 | -3.99181 | -2.21846 |
| Slide | 100973270129 | PC4 | t-test | 2.58e-07 | -1.9528 | -2.79774 | -1.10777 |
| Slide | 100973270135 | PC4 | t-test | 4.39e-03 | -1.0788 | -1.92524 | -0.23244 |
| Slide | 100973270157 | PC4 | t-test | 8.33e-04 | -1.2650 | -2.11065 | -0.41926 |
| Slide | 100973270167 | PC4 | t-test | 6.42e-05 | -1.5788 | -2.46074 | -0.69689 |
| Slide | 100973330037 | PC4 | t-test | 1.14e-04 | -1.5339 | -2.42159 | -0.64618 |
| Slide | 100973330043 | PC4 | t-test | 3.16e-15 | -3.1708 | -4.06293 | -2.27859 |
| Slide | 100973330044 | PC4 | t-test | 8.26e-16 | -3.2105 | -4.09497 | -2.32607 |
| Slide | 100973330051 | PC4 | t-test | 3.72e-03 | -1.1009 | -1.94908 | -0.25278 |
| Slide | 101070190089 | PC4 | t-test | 2.19e-09 | -2.2730 | -3.11881 | -1.42717 |
| Slide | 101070190097 | PC4 | t-test | 1.99e-03 | -1.2817 | -2.20802 | -0.35532 |
| Slide | 101070190098 | PC4 | t-test | 5.73e-04 | -1.3036 | -2.14914 | -0.45807 |
| Slide | 101070190110 | PC4 | t-test | 1.97e-03 | -1.1717 | -2.01776 | -0.32563 |
| Slide | 101070190122 | PC4 | t-test | 7.91e-04 | -1.3299 | -2.21523 | -0.44464 |
| Slide | 101070190123 | PC4 | t-test | 5.15e-04 | -1.3145 | -2.16001 | -0.46902 |
| Slide | 101070190017 | PC4 | t-test | 9.82e-04 | -1.2617 | -2.11703 | -0.40643 |
| Slide | 101070190018 | PC4 | t-test | 3.61e-05 | -1.6439 | -2.53217 | -0.75559 |
| Slide | 101070190033 | PC4 | t-test | 3.99e-07 | -2.0218 | -2.91103 | -1.13264 |
| Slide | 101070190051 | PC4 | t-test | 1.90e-03 | -1.2357 | -2.12462 | -0.34672 |
| Slide | 101070190111 | PC4 | t-test | 4.08e-04 | -1.4649 | -2.39054 | -0.53932 |
| Slide | 100994770033 | PC4 | t-test | 8.42e-04 | 1.3198 | 0.43670 | 2.20287 |
| Slide | 101070190038 | PC4 | t-test | 3.73e-03 | -1.2074 | -2.13763 | -0.27708 |
| Slide | 101070190088 | PC4 | t-test | 7.61e-03 | -1.0556 | -1.93961 | -0.17151 |
| Slide | 101070190121 | PC4 | t-test | 4.23e-03 | -1.0832 | -1.92957 | -0.23680 |
| Slide | 200078650161 | PC4 | t-test | 2.45e-06 | 1.7812 | 0.93804 | 2.62435 |
| Slide | 200078650234 | PC4 | t-test | 5.79e-05 | 1.5213 | 0.67676 | 2.36585 |
| Slide | 200078650003 | PC4 | t-test | 9.57e-03 | 1.0248 | 0.14063 | 1.90893 |
| Slide | 200078650250 | PC4 | t-test | 1.16e-05 | 1.6584 | 0.81459 | 2.50227 |
| Slide | 200078650040 | PC4 | t-test | 5.26e-03 | -1.1666 | -2.10095 | -0.23235 |
| Slide | 200090270100 | PC4 | t-test | 5.08e-03 | 1.0613 | 0.21479 | 1.90772 |
| Slide | 200078650152 | PC4 | t-test | 1.17e-06 | 1.9180 | 1.03794 | 2.79811 |
| Slide | 200078650170 | PC4 | t-test | 3.40e-05 | 1.5678 | 0.72354 | 2.41216 |
| Slide | 200078650173 | PC4 | t-test | 2.74e-03 | 1.1867 | 0.30139 | 2.07202 |
| Slide | 200078650001 | PC4 | t-test | 6.82e-08 | 2.6697 | 1.56700 | 3.77238 |
| Slide | 200090270021 | PC4 | t-test | 7.38e-11 | 3.0035 | 1.97758 | 4.02945 |
| Slide | 200090280040 | PC4 | t-test | 3.98e-04 | 1.3404 | 0.49501 | 2.18577 |
| Slide | 200090280042 | PC4 | t-test | 4.58e-05 | 1.5419 | 0.69746 | 2.38634 |
| Slide | 200078650109 | PC4 | t-test | 1.20e-03 | -1.2856 | -2.17241 | -0.39870 |
| Slide | 200078650240 | PC4 | t-test | 7.75e-03 | 1.0087 | 0.16202 | 1.85530 |
| sentrix_col | 1 | PC4 | t-test | 3.39e-03 | -0.1996 | -0.34767 | -0.05147 |
| sentrix_row | PC4 | F-test | 1.30e-27 | 28.1711 | |||
| sentrix_row | 1 | PC4 | t-test | 5.61e-08 | 0.4420 | 0.26188 | 0.62209 |
| sentrix_row | 2 | PC4 | t-test | 1.45e-03 | 0.2727 | 0.08263 | 0.46268 |
| sentrix_row | 5 | PC4 | t-test | 1.54e-14 | -0.6474 | -0.83311 | -0.46174 |
| sentrix_row | 6 | PC4 | t-test | 2.09e-26 | -0.8796 | -1.06058 | -0.69865 |
| Batch | PC5 | F-test | 3.51e-06 | 21.6459 | |||
| Batch | 1 | PC5 | t-test | 3.49e-04 | -0.1537 | -0.24726 | -0.06013 |
| Batch | 2 | PC5 | t-test | 2.38e-07 | 0.2268 | 0.13157 | 0.32210 |
| Slide | PC5 | F-test | 1.38e-43 | 3.7412 | |||
| Slide | 3998888072 | PC5 | t-test | 3.19e-03 | -0.7820 | -1.37459 | -0.18938 |
| Slide | 3998888045 | PC5 | t-test | 8.85e-04 | -0.9203 | -1.53875 | -0.30193 |
| Slide | 3998888059 | PC5 | t-test | 1.94e-04 | 1.0834 | 0.43424 | 1.73264 |
| Slide | 101103430120 | PC5 | t-test | 1.91e-03 | 0.8592 | 0.24058 | 1.47787 |
| Slide | 3998888017 | PC5 | t-test | 8.84e-03 | -0.7252 | -1.34429 | -0.10608 |
| Slide | 3998888065 | PC5 | t-test | 4.11e-03 | -0.7610 | -1.35364 | -0.16828 |
| Slide | 3998919043 | PC5 | t-test | 6.09e-04 | 0.9124 | 0.31781 | 1.50707 |
| Slide | 3998919138 | PC5 | t-test | 6.99e-03 | 0.7154 | 0.12257 | 1.30823 |
| Slide | 100973270155 | PC5 | t-test | 2.21e-03 | -0.8883 | -1.53705 | -0.23959 |
| Slide | 100973270162 | PC5 | t-test | 6.92e-03 | -0.7164 | -1.30918 | -0.12353 |
| Slide | 100973270083 | PC5 | t-test | 6.84e-03 | -0.7173 | -1.31011 | -0.12446 |
| Slide | 100973270135 | PC5 | t-test | 1.95e-04 | 0.9873 | 0.39551 | 1.57908 |
| Slide | 100973330003 | PC5 | t-test | 5.91e-04 | -0.9107 | -1.50277 | -0.31855 |
| Slide | 101070190123 | PC5 | t-test | 5.86e-03 | 0.7309 | 0.13810 | 1.32366 |
| Slide | 101070190051 | PC5 | t-test | 1.13e-03 | -0.9016 | -1.52011 | -0.28314 |
| Slide | 101070190111 | PC5 | t-test | 8.57e-03 | -0.7634 | -1.41260 | -0.11429 |
| Slide | 101070190071 | PC5 | t-test | 4.45e-03 | -0.7543 | -1.34701 | -0.16161 |
| Slide | 101070190121 | PC5 | t-test | 1.10e-04 | 1.0247 | 0.43304 | 1.61626 |
| Slide | 101130760008 | PC5 | t-test | 8.52e-03 | -0.6978 | -1.29067 | -0.10490 |
| Slide | 200078650097 | PC5 | t-test | 6.72e-03 | 0.7188 | 0.12603 | 1.31167 |
| Slide | 200078650115 | PC5 | t-test | 3.24e-04 | 0.9950 | 0.37687 | 1.61307 |
| Slide | 200078650136 | PC5 | t-test | 1.03e-04 | 1.0794 | 0.45892 | 1.69993 |
| Slide | 200078650250 | PC5 | t-test | 3.79e-06 | -1.2237 | -1.81430 | -0.63310 |
| Slide | 200078650021 | PC5 | t-test | 6.04e-04 | 1.0511 | 0.36645 | 1.73569 |
| Slide | 200078650055 | PC5 | t-test | 8.88e-03 | 0.7265 | 0.10583 | 1.34715 |
| Slide | 200078650110 | PC5 | t-test | 4.69e-03 | -0.7500 | -1.34267 | -0.15723 |
| Slide | 200078650111 | PC5 | t-test | 8.12e-04 | -0.8877 | -1.47988 | -0.29547 |
| Slide | 200090280019 | PC5 | t-test | 6.55e-03 | 0.7211 | 0.12830 | 1.31393 |
| Slide | 200078650045 | PC5 | t-test | 7.75e-04 | 0.8911 | 0.29896 | 1.48334 |
| Slide | 200078650210 | PC5 | t-test | 6.74e-03 | -0.7868 | -1.43584 | -0.13769 |
| Slide | 200078650226 | PC5 | t-test | 4.19e-03 | 0.7593 | 0.16665 | 1.35202 |
| Slide | 200090270021 | PC5 | t-test | 7.19e-03 | -0.8722 | -1.59757 | -0.14686 |
| Slide | 200078650051 | PC5 | t-test | 4.10e-04 | 0.9825 | 0.36143 | 1.60361 |
| Slide | 200078650129 | PC5 | t-test | 8.42e-03 | 0.7297 | 0.11062 | 1.34881 |
| sentrix_row | 5 | PC5 | t-test | 6.94e-03 | 0.1542 | 0.02741 | 0.28090 |
| Sex | PC5 | F-test | 4.27e-03 | 8.1851 | |||
| Sex | F | PC5 | t-test | 1.74e-04 | 0.1636 | 0.06845 | 0.25874 |
| Slide | PC6 | F-test | 1.99e-13 | 2.1115 | |||
| Slide | 3998888022 | PC6 | t-test | 2.03e-04 | 0.7936 | 0.31659 | 1.27065 |
| Slide | 3998888023 | PC6 | t-test | 4.87e-03 | -0.6054 | -1.08589 | -0.12485 |
| Slide | 100973270162 | PC6 | t-test | 7.48e-03 | 0.5511 | 0.09054 | 1.01157 |
| Slide | 100973330047 | PC6 | t-test | 5.91e-06 | -0.9339 | -1.39387 | -0.47394 |
| Slide | 100973330054 | PC6 | t-test | 4.32e-03 | 0.6114 | 0.13258 | 1.09017 |
| Slide | 100973330082 | PC6 | t-test | 8.97e-04 | 0.6797 | 0.22252 | 1.13692 |
| Slide | 101070190063 | PC6 | t-test | 6.78e-03 | -0.6070 | -1.10809 | -0.10589 |
| Slide | 100973270083 | PC6 | t-test | 4.21e-04 | -0.7253 | -1.18458 | -0.26595 |
| Slide | 100973270157 | PC6 | t-test | 3.80e-03 | -0.5926 | -1.05015 | -0.13506 |
| Slide | 101070190148 | PC6 | t-test | 7.71e-03 | -0.5456 | -1.00332 | -0.08790 |
| Slide | 100994770033 | PC6 | t-test | 9.61e-06 | 0.9557 | 0.47390 | 1.43751 |
| Slide | 101070190071 | PC6 | t-test | 8.61e-03 | 0.5392 | 0.08046 | 0.99794 |
| Slide | 101070190161 | PC6 | t-test | 7.25e-04 | 0.6917 | 0.23456 | 1.14885 |
| Slide | 101103430112 | PC6 | t-test | 3.35e-03 | 0.6007 | 0.14314 | 1.05817 |
| Slide | 101103430118 | PC6 | t-test | 3.69e-04 | 0.7302 | 0.27223 | 1.18810 |
| Slide | 200078650086 | PC6 | t-test | 1.08e-06 | -1.0422 | -1.51869 | -0.56561 |
| Slide | 200078650115 | PC6 | t-test | 4.19e-03 | 0.6122 | 0.13446 | 1.09003 |
| Slide | 200090280007 | PC6 | t-test | 4.46e-04 | -0.8327 | -1.36238 | -0.30295 |
| Slide | 200090280019 | PC6 | t-test | 3.66e-04 | 0.7292 | 0.27222 | 1.18619 |
| Slide | 200078650152 | PC6 | t-test | 2.58e-03 | -0.6494 | -1.13094 | -0.16783 |
| Slide | 200078650206 | PC6 | t-test | 5.38e-03 | -0.6002 | -1.08208 | -0.11827 |
| Slide | 200078650231 | PC6 | t-test | 5.95e-04 | -0.7378 | -1.21767 | -0.25788 |
| Slide | 200078650041 | PC6 | t-test | 2.27e-03 | 0.6561 | 0.17591 | 1.13625 |
| Slide | 200078650109 | PC6 | t-test | 3.87e-04 | -0.7582 | -1.23541 | -0.28103 |
| Slide | 200078650224 | PC6 | t-test | 2.60e-03 | -0.6188 | -1.07782 | -0.15972 |
| Slide | PC7 | F-test | 5.37e-71 | 5.1328 | |||
| Slide | 3998888072 | PC7 | t-test | 8.91e-03 | -0.5490 | -1.01808 | -0.07983 |
| Slide | 3998888170 | PC7 | t-test | 2.24e-05 | -0.8885 | -1.35618 | -0.42077 |
| Slide | 3998888008 | PC7 | t-test | 6.42e-05 | -0.8378 | -1.30572 | -0.36980 |
| Slide | 3998888022 | PC7 | t-test | 1.35e-07 | -1.1541 | -1.64207 | -0.66615 |
| Slide | 3998888024 | PC7 | t-test | 1.61e-03 | -0.6616 | -1.13030 | -0.19284 |
| Slide | 3998888041 | PC7 | t-test | 5.06e-04 | -0.7615 | -1.25069 | -0.27237 |
| Slide | 3998888017 | PC7 | t-test | 1.36e-06 | -1.0561 | -1.54381 | -0.56848 |
| Slide | 3998888023 | PC7 | t-test | 3.68e-07 | -1.1162 | -1.60555 | -0.62679 |
| Slide | 3998888065 | PC7 | t-test | 2.17e-05 | -0.8900 | -1.35771 | -0.42231 |
| Slide | 3998888069 | PC7 | t-test | 3.78e-03 | -0.6077 | -1.07665 | -0.13879 |
| Slide | 3998919043 | PC7 | t-test | 2.80e-03 | -0.6271 | -1.09594 | -0.15822 |
| Slide | 3998919058 | PC7 | t-test | 9.13e-03 | -0.5713 | -1.06122 | -0.08148 |
| Slide | 3998919138 | PC7 | t-test | 2.93e-04 | -0.7595 | -1.22778 | -0.29113 |
| Slide | 3998920007 | PC7 | t-test | 5.39e-03 | -0.5839 | -1.05295 | -0.11493 |
| Slide | 100973270083 | PC7 | t-test | 5.62e-04 | 0.7235 | 0.25500 | 1.19196 |
| Slide | 100973270094 | PC7 | t-test | 7.12e-05 | 0.8695 | 0.38079 | 1.35813 |
| Slide | 100973270100 | PC7 | t-test | 6.24e-05 | 0.8392 | 0.37124 | 1.30715 |
| Slide | 100973270129 | PC7 | t-test | 1.98e-04 | 0.7803 | 0.31211 | 1.24857 |
| Slide | 100973270135 | PC7 | t-test | 5.70e-08 | 1.1436 | 0.67409 | 1.61308 |
| Slide | 100973270157 | PC7 | t-test | 4.17e-03 | 0.6013 | 0.13230 | 1.07020 |
| Slide | 100973270167 | PC7 | t-test | 2.50e-03 | 0.6638 | 0.17325 | 1.15439 |
| Slide | 100973330003 | PC7 | t-test | 1.27e-05 | 0.9146 | 0.44706 | 1.38219 |
| Slide | 100973330037 | PC7 | t-test | 5.90e-05 | 0.8850 | 0.39312 | 1.37684 |
| Slide | 100973330044 | PC7 | t-test | 2.38e-03 | 0.6674 | 0.17650 | 1.15836 |
| Slide | 100973330048 | PC7 | t-test | 7.03e-03 | 0.5657 | 0.09659 | 1.03473 |
| Slide | 100973330051 | PC7 | t-test | 7.96e-04 | 0.7047 | 0.23535 | 1.17406 |
| Slide | 101070190089 | PC7 | t-test | 9.49e-03 | 0.5444 | 0.07525 | 1.01353 |
| Slide | 101070190097 | PC7 | t-test | 6.90e-03 | 0.6208 | 0.10718 | 1.13434 |
| Slide | 101070190098 | PC7 | t-test | 3.79e-03 | 0.6075 | 0.13860 | 1.07646 |
| Slide | 101070190099 | PC7 | t-test | 8.37e-03 | 0.5550 | 0.08452 | 1.02544 |
| Slide | 101070190110 | PC7 | t-test | 2.57e-03 | 0.6327 | 0.16385 | 1.10152 |
| Slide | 101070190122 | PC7 | t-test | 3.50e-04 | 0.7828 | 0.29375 | 1.27189 |
| Slide | 101070190123 | PC7 | t-test | 1.36e-07 | 1.1101 | 0.64066 | 1.57944 |
| Slide | 101070190148 | PC7 | t-test | 9.78e-04 | 0.6915 | 0.22290 | 1.16012 |
| Slide | 101070190017 | PC7 | t-test | 5.41e-04 | -0.7287 | -1.19916 | -0.25824 |
| Slide | 101070190018 | PC7 | t-test | 2.63e-03 | -0.6614 | -1.15283 | -0.17006 |
| Slide | 101070190051 | PC7 | t-test | 8.19e-03 | -0.5813 | -1.07280 | -0.08988 |
| Slide | 100994770033 | PC7 | t-test | 1.50e-10 | -1.4048 | -1.89273 | -0.91678 |
| Slide | 101103430112 | PC7 | t-test | 4.41e-03 | -0.6004 | -1.07167 | -0.12907 |
| Slide | 101103430114 | PC7 | t-test | 5.27e-03 | -0.6422 | -1.15676 | -0.12772 |
| Slide | 200078650003 | PC7 | t-test | 5.01e-04 | -0.7622 | -1.25135 | -0.27303 |
| Slide | 200078650115 | PC7 | t-test | 4.81e-04 | 0.7645 | 0.27538 | 1.25368 |
| Slide | 200078650111 | PC7 | t-test | 1.83e-03 | 0.6538 | 0.18503 | 1.12255 |
| Slide | 200090270100 | PC7 | t-test | 2.18e-03 | 0.6430 | 0.17424 | 1.11184 |
| Slide | 200090280005 | PC7 | t-test | 7.59e-05 | 0.8324 | 0.36276 | 1.30212 |
| Slide | 200090280007 | PC7 | t-test | 6.56e-03 | 0.6600 | 0.11735 | 1.20267 |
| Slide | 200090280019 | PC7 | t-test | 1.94e-03 | 0.6501 | 0.18130 | 1.11885 |
| Slide | 200090270021 | PC7 | t-test | 6.20e-06 | -1.1608 | -1.73384 | -0.58770 |
| Sex | PC7 | F-test | 5.22e-05 | 16.4411 | |||
| Sex | M | PC7 | t-test | 2.13e-04 | 0.1342 | 0.05569 | 0.21263 |
| Sex | F | PC7 | t-test | 1.52e-04 | -0.1361 | -0.21456 | -0.05768 |
| AGE_all | PC7 | F-test | 7.57e-03 | 7.1468 | |||
| Batch | PC8 | F-test | 7.22e-61 | 291.3590 | |||
| Batch | 1 | PC8 | t-test | 3.93e-62 | -0.5243 | -0.59053 | -0.45804 |
| Batch | 2 | PC8 | t-test | 1.65e-52 | 0.4559 | 0.39288 | 0.51897 |
| Sample.Set | PC8 | F-test | 1.46e-04 | 8.8759 | |||
| Sample.Set | Ian Hickie | PC8 | t-test | 2.95e-05 | 0.3632 | 0.16932 | 0.55705 |
| Slide | PC8 | F-test | 4.51e-182 | 11.3995 | |||
| Slide | 3998888019 | PC8 | t-test | 6.78e-10 | -1.1614 | -1.58031 | -0.74250 |
| Slide | 3998888067 | PC8 | t-test | 3.32e-06 | -0.9159 | -1.35522 | -0.47648 |
| Slide | 3998888072 | PC8 | t-test | 1.66e-05 | -0.8126 | -1.23374 | -0.39150 |
| Slide | 3998888109 | PC8 | t-test | 6.98e-07 | -0.9769 | -1.41589 | -0.53786 |
| Slide | 3998888008 | PC8 | t-test | 8.23e-08 | -1.0146 | -1.43636 | -0.59291 |
| Slide | 3998888022 | PC8 | t-test | 3.73e-05 | -0.8127 | -1.25263 | -0.37279 |
| Slide | 3998888024 | PC8 | t-test | 3.08e-06 | -0.8816 | -1.30310 | -0.46003 |
| Slide | 3998888041 | PC8 | t-test | 6.31e-04 | -0.6754 | -1.11687 | -0.23401 |
| Slide | 3998888042 | PC8 | t-test | 7.17e-18 | -1.6414 | -2.06359 | -1.21925 |
| Slide | 3998888045 | PC8 | t-test | 1.95e-07 | -1.0326 | -1.47491 | -0.59021 |
| Slide | 3998888068 | PC8 | t-test | 1.23e-06 | -0.9163 | -1.33768 | -0.49499 |
| Slide | 3998888071 | PC8 | t-test | 1.80e-03 | -0.6156 | -1.05641 | -0.17485 |
| Slide | 3998888080 | PC8 | t-test | 2.29e-09 | -1.1320 | -1.55381 | -0.71021 |
| Slide | 3998888081 | PC8 | t-test | 7.79e-08 | -1.0199 | -1.44301 | -0.59677 |
| Slide | 3998888083 | PC8 | t-test | 5.69e-20 | -1.7396 | -2.16024 | -1.31906 |
| Slide | 3998888086 | PC8 | t-test | 2.11e-11 | -1.3151 | -1.75169 | -0.87845 |
| Slide | 3998888087 | PC8 | t-test | 3.46e-03 | -0.5535 | -0.97652 | -0.13044 |
| Slide | 3998888017 | PC8 | t-test | 1.15e-08 | -1.1261 | -1.56573 | -0.68653 |
| Slide | 3998888023 | PC8 | t-test | 6.25e-06 | -0.8899 | -1.32945 | -0.45042 |
| Slide | 3998888065 | PC8 | t-test | 5.60e-04 | -0.6540 | -1.07740 | -0.23059 |
| Slide | 3998888069 | PC8 | t-test | 7.22e-08 | -1.0174 | -1.43847 | -0.59642 |
| Slide | 3998919138 | PC8 | t-test | 1.79e-03 | -0.5899 | -1.01205 | -0.16781 |
| Slide | 101070190070 | PC8 | t-test | 1.66e-09 | -1.1401 | -1.56126 | -0.71901 |
| Slide | 100973270085 | PC8 | t-test | 7.88e-03 | 0.5243 | 0.08323 | 0.96544 |
| Slide | 100973330037 | PC8 | t-test | 4.07e-03 | -0.5668 | -1.00781 | -0.12589 |
| Slide | 100994770033 | PC8 | t-test | 9.48e-06 | -0.8725 | -1.31209 | -0.43287 |
| Slide | 101130760008 | PC8 | t-test | 1.01e-03 | 0.6210 | 0.19903 | 1.04303 |
| Slide | 101103430118 | PC8 | t-test | 1.83e-03 | 0.5887 | 0.16658 | 1.01084 |
| Slide | 200078650218 | PC8 | t-test | 6.71e-03 | 0.5349 | 0.09387 | 0.97601 |
| Slide | 200078650003 | PC8 | t-test | 4.03e-03 | -0.5674 | -1.00837 | -0.12645 |
| Slide | 200078650192 | PC8 | t-test | 3.52e-04 | 0.7047 | 0.26425 | 1.14510 |
| Slide | 200078650250 | PC8 | t-test | 2.29e-09 | 1.1275 | 0.70744 | 1.54765 |
| Slide | 200078650021 | PC8 | t-test | 1.50e-04 | -0.8309 | -1.32031 | -0.34146 |
| Slide | 200078650111 | PC8 | t-test | 1.97e-04 | 0.7029 | 0.28121 | 1.12452 |
| Slide | 200090280019 | PC8 | t-test | 2.45e-03 | 0.5724 | 0.15018 | 0.99455 |
| Slide | 200078650152 | PC8 | t-test | 1.85e-05 | -0.8438 | -1.28356 | -0.40404 |
| Slide | 200078650188 | PC8 | t-test | 2.68e-08 | 1.1470 | 0.68748 | 1.60657 |
| Slide | 200078650206 | PC8 | t-test | 3.50e-05 | 0.8155 | 0.37564 | 1.25545 |
| Slide | 200078650226 | PC8 | t-test | 6.65e-03 | 0.5128 | 0.09043 | 0.93522 |
| Slide | 200078650255 | PC8 | t-test | 8.32e-04 | 0.6591 | 0.21853 | 1.09976 |
| Slide | 200078650261 | PC8 | t-test | 7.91e-05 | 0.7451 | 0.32362 | 1.16654 |
| Slide | 200078650001 | PC8 | t-test | 1.52e-03 | -0.7830 | -1.33498 | -0.23108 |
| Slide | 200078650041 | PC8 | t-test | 6.66e-04 | 0.6726 | 0.23108 | 1.11408 |
| Slide | 200078650187 | PC8 | t-test | 9.27e-04 | 0.6532 | 0.21254 | 1.09381 |
| Slide | 200078650224 | PC8 | t-test | 5.73e-03 | 0.5221 | 0.09977 | 0.94450 |
| Slide | 200078650237 | PC8 | t-test | 1.00e-05 | 0.8721 | 0.43149 | 1.31281 |
| Slide | 200078650240 | PC8 | t-test | 2.68e-03 | 0.5673 | 0.14505 | 0.98947 |
| sentrix_row | PC8 | F-test | 2.71e-34 | 34.9656 | |||
| sentrix_row | 1 | PC8 | t-test | 3.42e-28 | -0.4410 | -0.52855 | -0.35344 |
| sentrix_row | 2 | PC8 | t-test | 1.15e-13 | -0.3127 | -0.40566 | -0.21974 |
| sentrix_row | 4 | PC8 | t-test | 5.68e-03 | 0.1146 | 0.02259 | 0.20655 |
| sentrix_row | 5 | PC8 | t-test | 1.17e-04 | 0.1557 | 0.06610 | 0.24525 |
| sentrix_row | 6 | PC8 | t-test | 3.01e-09 | 0.2410 | 0.15117 | 0.33089 |
| Sex | PC8 | F-test | 4.26e-03 | 8.1892 | |||
| Sex | M | PC8 | t-test | 2.45e-04 | -0.1180 | -0.18772 | -0.04830 |
| Batch | PC9 | F-test | 5.61e-06 | 20.7346 | |||
| Batch | 1 | PC9 | t-test | 6.33e-05 | 0.1112 | 0.05072 | 0.17172 |
| Batch | 2 | PC9 | t-test | 2.66e-07 | -0.1463 | -0.20796 | -0.08461 |
| Sample.Set | Martin_Kennedy | PC9 | t-test | 2.52e-03 | -0.1292 | -0.22440 | -0.03403 |
| Slide | PC9 | F-test | 1.90e-27 | 2.9043 | |||
| Slide | 3998888109 | PC9 | t-test | 1.57e-03 | -0.5562 | -0.94914 | -0.16320 |
| Slide | 3998888180 | PC9 | t-test | 7.53e-03 | -0.4493 | -0.82517 | -0.07351 |
| Slide | 3998888024 | PC9 | t-test | 5.32e-04 | 0.5821 | 0.20674 | 0.95741 |
| Slide | 101070190002 | PC9 | t-test | 2.45e-03 | 0.5093 | 0.13364 | 0.88488 |
| Slide | 101103430092 | PC9 | t-test | 1.37e-04 | 0.6690 | 0.27733 | 1.06065 |
| Slide | 100973270154 | PC9 | t-test | 4.63e-08 | 0.9189 | 0.54419 | 1.29353 |
| Slide | 100973270155 | PC9 | t-test | 5.87e-04 | 0.6324 | 0.22141 | 1.04337 |
| Slide | 100973270162 | PC9 | t-test | 8.25e-07 | 0.8269 | 0.45282 | 1.20101 |
| Slide | 100973330047 | PC9 | t-test | 2.62e-04 | 0.6149 | 0.23869 | 0.99103 |
| Slide | 100973330054 | PC9 | t-test | 3.91e-04 | 0.6222 | 0.23031 | 1.01404 |
| Slide | 101070190070 | PC9 | t-test | 2.95e-03 | -0.4998 | -0.87542 | -0.12410 |
| Slide | 101130760005 | PC9 | t-test | 4.87e-04 | -0.5861 | -0.96138 | -0.21074 |
| Slide | 101070190122 | PC9 | t-test | 4.17e-03 | -0.5029 | -0.89524 | -0.11058 |
| Slide | 101070190051 | PC9 | t-test | 1.65e-03 | -0.5522 | -0.94431 | -0.16001 |
| Slide | 101070190109 | PC9 | t-test | 1.28e-05 | -0.7672 | -1.15947 | -0.37486 |
| Slide | 100994770033 | PC9 | t-test | 6.25e-03 | -0.4801 | -0.87251 | -0.08769 |
| Slide | 101130760008 | PC9 | t-test | 2.97e-03 | -0.5017 | -0.87914 | -0.12434 |
| Slide | 101103430114 | PC9 | t-test | 9.34e-03 | -0.4807 | -0.89411 | -0.06730 |
| Slide | 200078650192 | PC9 | t-test | 5.35e-03 | -0.4899 | -0.88307 | -0.09678 |
| Slide | 200090270152 | PC9 | t-test | 8.28e-03 | -0.4861 | -0.89760 | -0.07457 |
| Slide | 200090280005 | PC9 | t-test | 2.50e-03 | -0.5109 | -0.88848 | -0.13326 |
| Slide | 200078650170 | PC9 | t-test | 2.60e-06 | 0.7910 | 0.41559 | 1.16643 |
| Slide | 200090270021 | PC9 | t-test | 3.71e-05 | 0.8504 | 0.39015 | 1.31069 |
| Slide | 200078650258 | PC9 | t-test | 6.36e-03 | -0.4811 | -0.87517 | -0.08703 |
| sentrix_row | PC9 | F-test | 8.85e-04 | 4.1790 | |||
| sentrix_row | 6 | PC9 | t-test | 4.70e-05 | -0.1482 | -0.22890 | -0.06748 |
| Sex | F | PC9 | t-test | 7.79e-03 | -0.0756 | -0.13768 | -0.01353 |
| Batch | PC10 | F-test | 4.27e-14 | 57.9233 | |||
| Batch | 1 | PC10 | t-test | 1.69e-14 | -0.2001 | -0.25657 | -0.14368 |
| Batch | 2 | PC10 | t-test | 1.84e-10 | 0.1554 | 0.10263 | 0.20814 |
| Sample.Set | PC10 | F-test | 4.04e-07 | 14.8373 | |||
| Sample.Set | George_Mellick | PC10 | t-test | 4.84e-05 | 0.1547 | 0.07525 | 0.23414 |
| Sample.Set | Martin_Kennedy | PC10 | t-test | 3.80e-11 | -0.2522 | -0.33672 | -0.16775 |
| Slide | PC10 | F-test | 2.92e-38 | 3.4688 | |||
| Slide | 3998888022 | PC10 | t-test | 8.09e-05 | 0.6166 | 0.26734 | 0.96589 |
| Slide | 3998888042 | PC10 | t-test | 2.17e-03 | -0.4612 | -0.79722 | -0.12510 |
| Slide | 3998888068 | PC10 | t-test | 2.09e-04 | -0.5594 | -0.89634 | -0.22250 |
| Slide | 3998888071 | PC10 | t-test | 3.71e-05 | -0.6463 | -0.99607 | -0.29656 |
| Slide | 3998888081 | PC10 | t-test | 4.67e-03 | -0.4251 | -0.76102 | -0.08926 |
| Slide | 3998888083 | PC10 | t-test | 2.72e-04 | -0.5456 | -0.88031 | -0.21091 |
| Slide | 3998888086 | PC10 | t-test | 2.12e-06 | -0.7410 | -1.08964 | -0.39241 |
| Slide | 3998888087 | PC10 | t-test | 6.02e-03 | -0.4120 | -0.74717 | -0.07674 |
| Slide | 3998888176 | PC10 | t-test | 1.24e-06 | -0.7295 | -1.06503 | -0.39399 |
| Slide | 101103430092 | PC10 | t-test | 1.96e-03 | -0.4856 | -0.83611 | -0.13517 |
| Slide | 3998888023 | PC10 | t-test | 7.79e-04 | 0.5288 | 0.17725 | 0.88038 |
| Slide | 101070190150 | PC10 | t-test | 4.21e-03 | -0.4301 | -0.76606 | -0.09424 |
| Slide | 100973270085 | PC10 | t-test | 1.53e-04 | -0.5969 | -0.94883 | -0.24489 |
| Slide | 100973270128 | PC10 | t-test | 4.80e-03 | -0.4430 | -0.79410 | -0.09193 |
| Slide | 100973270135 | PC10 | t-test | 1.76e-04 | -0.5686 | -0.90705 | -0.23009 |
| Slide | 100973270157 | PC10 | t-test | 3.10e-03 | -0.4472 | -0.78504 | -0.10935 |
| Slide | 100973330003 | PC10 | t-test | 5.99e-05 | -0.6026 | -0.93776 | -0.26738 |
| Slide | 101070190122 | PC10 | t-test | 6.24e-03 | -0.4294 | -0.78030 | -0.07843 |
| Slide | 101070190111 | PC10 | t-test | 9.86e-03 | 0.4238 | 0.05673 | 0.79096 |
| Slide | 101070190115 | PC10 | t-test | 5.89e-03 | 0.4522 | 0.08518 | 0.81923 |
| Slide | 101130760004 | PC10 | t-test | 5.04e-04 | 0.5214 | 0.18659 | 0.85620 |
| Slide | 101070190071 | PC10 | t-test | 7.97e-04 | 0.5028 | 0.16788 | 0.83764 |
| Slide | 101070190121 | PC10 | t-test | 3.88e-04 | 0.5326 | 0.19734 | 0.86793 |
| Slide | 101070190161 | PC10 | t-test | 4.87e-03 | 0.4223 | 0.08707 | 0.75744 |
| Slide | 200078650021 | PC10 | t-test | 4.37e-03 | 0.4942 | 0.10664 | 0.88167 |
| Slide | 200078650170 | PC10 | t-test | 9.92e-03 | 0.3868 | 0.05151 | 0.72211 |
| Slide | 200078650188 | PC10 | t-test | 3.70e-04 | -0.5843 | -0.95077 | -0.21774 |
| Slide | 200078650194 | PC10 | t-test | 1.41e-03 | 0.5242 | 0.15744 | 0.89096 |
| Slide | 200078650159 | PC10 | t-test | 1.22e-04 | 0.6010 | 0.25169 | 0.95039 |
| Sex | PC10 | F-test | 4.26e-06 | 21.2665 | |||
| Sex | M | PC10 | t-test | 6.74e-04 | 0.0864 | 0.03134 | 0.14137 |
| Sex | F | PC10 | t-test | 1.45e-07 | -0.1346 | -0.19041 | -0.07885 |
| Slide | PC11 | F-test | 7.98e-59 | 4.5139 | |||
| Slide | 3998888067 | PC11 | t-test | 7.19e-03 | 0.4253 | 0.07161 | 0.77907 |
| Slide | 3998888008 | PC11 | t-test | 5.31e-03 | 0.4232 | 0.08388 | 0.76260 |
| Slide | 3998888022 | PC11 | t-test | 3.46e-03 | 0.4625 | 0.10894 | 0.81615 |
| Slide | 3998888041 | PC11 | t-test | 3.54e-03 | 0.4615 | 0.10788 | 0.81509 |
| Slide | 3998888068 | PC11 | t-test | 2.02e-06 | 0.7186 | 0.38121 | 1.05594 |
| Slide | 3998888071 | PC11 | t-test | 5.19e-03 | 0.4423 | 0.08859 | 0.79594 |
| Slide | 101070190050 | PC11 | t-test | 5.43e-03 | 0.4223 | 0.08279 | 0.76174 |
| Slide | 100973270154 | PC11 | t-test | 3.04e-04 | 0.5498 | 0.20981 | 0.88977 |
| Slide | 100973270155 | PC11 | t-test | 1.79e-03 | 0.5179 | 0.14726 | 0.88856 |
| Slide | 100973270162 | PC11 | t-test | 5.21e-05 | 0.6124 | 0.27450 | 0.95036 |
| Slide | 100973270085 | PC11 | t-test | 7.27e-03 | 0.4255 | 0.07116 | 0.77987 |
| Slide | 100973270167 | PC11 | t-test | 3.62e-03 | 0.4612 | 0.10696 | 0.81541 |
| Slide | 101070190099 | PC11 | t-test | 7.36e-04 | -0.5114 | -0.84974 | -0.17298 |
| Slide | 101070190123 | PC11 | t-test | 9.14e-04 | -0.5032 | -0.84223 | -0.16415 |
| Slide | 101070190148 | PC11 | t-test | 2.75e-06 | -0.7128 | -1.05202 | -0.37367 |
| Slide | 101070190017 | PC11 | t-test | 9.86e-03 | 0.3911 | 0.05234 | 0.72995 |
| Slide | 101070190111 | PC11 | t-test | 1.72e-04 | -0.6229 | -0.99310 | -0.25266 |
| Slide | 101130760004 | PC11 | t-test | 3.42e-06 | -0.7025 | -1.03995 | -0.36503 |
| Slide | 100994770033 | PC11 | t-test | 1.20e-14 | -1.2282 | -1.58153 | -0.87491 |
| Slide | 101070190121 | PC11 | t-test | 4.28e-03 | -0.4329 | -0.77156 | -0.09422 |
| Slide | 101103430113 | PC11 | t-test | 7.06e-03 | 0.4263 | 0.07258 | 0.78004 |
| Slide | 200078650250 | PC11 | t-test | 7.25e-05 | 0.6031 | 0.26377 | 0.94249 |
| Slide | 200078650110 | PC11 | t-test | 1.72e-03 | -0.4748 | -0.81336 | -0.13633 |
| Slide | 200090270100 | PC11 | t-test | 1.08e-05 | -0.6660 | -1.00363 | -0.32832 |
| Slide | 200090280007 | PC11 | t-test | 9.70e-03 | -0.4523 | -0.84321 | -0.06136 |
| Slide | 200090280009 | PC11 | t-test | 2.79e-03 | -0.4961 | -0.86681 | -0.12535 |
| Slide | 200090280019 | PC11 | t-test | 1.30e-03 | -0.4873 | -0.82575 | -0.14881 |
| Slide | 200078650045 | PC11 | t-test | 1.64e-08 | 0.8530 | 0.51644 | 1.18949 |
| Slide | 200078650188 | PC11 | t-test | 7.55e-07 | 0.8207 | 0.45073 | 1.19074 |
| Slide | 200078650001 | PC11 | t-test | 4.99e-03 | -0.5563 | -0.99926 | -0.11344 |
| Slide | 200078650189 | PC11 | t-test | 4.45e-05 | 0.6180 | 0.28005 | 0.95585 |
| Slide | 200078650109 | PC11 | t-test | 5.01e-03 | -0.4441 | -0.79780 | -0.09046 |
| Batch | 2 | PC12 | t-test | 6.04e-03 | 0.0555 | 0.01157 | 0.09939 |
| Slide | PC12 | F-test | 6.14e-11 | 1.9535 | |||
| Slide | 3998888019 | PC12 | t-test | 1.15e-04 | -0.4609 | -0.72771 | -0.19400 |
| Slide | 3998888008 | PC12 | t-test | 2.35e-04 | -0.4385 | -0.70479 | -0.17224 |
| Slide | 3998888083 | PC12 | t-test | 4.67e-03 | -0.3379 | -0.60485 | -0.07098 |
| Slide | 3998888086 | PC12 | t-test | 6.98e-04 | -0.4228 | -0.70131 | -0.14421 |
| Slide | 101070190016 | PC12 | t-test | 8.02e-08 | -0.6706 | -0.94913 | -0.39216 |
| Slide | 101070190050 | PC12 | t-test | 2.07e-04 | -0.4443 | -0.71166 | -0.17685 |
| Slide | 101103430120 | PC12 | t-test | 2.59e-04 | -0.4550 | -0.73317 | -0.17684 |
| Slide | 100973270155 | PC12 | t-test | 1.34e-03 | 0.4184 | 0.12686 | 0.71002 |
| Slide | 101070190062 | PC12 | t-test | 5.96e-03 | 0.3273 | 0.06129 | 0.59323 |
| Slide | 101070190070 | PC12 | t-test | 1.21e-06 | 0.5851 | 0.31633 | 0.85391 |
| Slide | 100973270100 | PC12 | t-test | 4.00e-04 | 0.4249 | 0.15682 | 0.69292 |
| Slide | 101070190097 | PC12 | t-test | 1.50e-03 | 0.4184 | 0.12394 | 0.71279 |
| Slide | 101070190099 | PC12 | t-test | 2.08e-06 | 0.5717 | 0.30301 | 0.84046 |
| Slide | 101070190123 | PC12 | t-test | 7.38e-04 | 0.4049 | 0.13692 | 0.67287 |
| Slide | 101070190148 | PC12 | t-test | 1.80e-03 | 0.3756 | 0.10676 | 0.64438 |
| Slide | 101070190018 | PC12 | t-test | 6.97e-03 | 0.3359 | 0.05764 | 0.61413 |
| Slide | 200078650194 | PC12 | t-test | 3.01e-03 | 0.3871 | 0.09549 | 0.67868 |
| Slide | 200078650261 | PC12 | t-test | 4.03e-03 | 0.3422 | 0.07624 | 0.60807 |
| Sex | F | PC12 | t-test | 6.66e-03 | 0.0572 | 0.01117 | 0.10327 |
| Batch | PC13 | F-test | 2.02e-11 | 45.5070 | |||
| Batch | 1 | PC13 | t-test | 2.03e-10 | -0.1285 | -0.17229 | -0.08464 |
| Batch | 2 | PC13 | t-test | 3.52e-11 | 0.1298 | 0.08740 | 0.17224 |
| Slide | PC13 | F-test | 1.87e-43 | 3.7345 | |||
| Slide | 3998888171 | PC13 | t-test | 4.73e-04 | 0.4373 | 0.15785 | 0.71670 |
| Slide | 3998888008 | PC13 | t-test | 1.48e-06 | -0.5792 | -0.84756 | -0.31081 |
| Slide | 3998888022 | PC13 | t-test | 9.39e-04 | -0.4139 | -0.69343 | -0.13438 |
| Slide | 3998888059 | PC13 | t-test | 8.76e-03 | -0.3441 | -0.63750 | -0.05067 |
| Slide | 3998888061 | PC13 | t-test | 1.07e-03 | -0.3921 | -0.65978 | -0.12436 |
| Slide | 3998888071 | PC13 | t-test | 7.16e-04 | 0.4246 | 0.14424 | 0.70487 |
| Slide | 3998920007 | PC13 | t-test | 1.13e-06 | -0.5822 | -0.84899 | -0.31545 |
| Slide | 100973270154 | PC13 | t-test | 1.94e-05 | -0.5125 | -0.78029 | -0.24473 |
| Slide | 100973330047 | PC13 | t-test | 2.58e-08 | -0.6666 | -0.93330 | -0.39982 |
| Slide | 100973270094 | PC13 | t-test | 2.75e-03 | -0.3748 | -0.65444 | -0.09509 |
| Slide | 100973270100 | PC13 | t-test | 3.78e-08 | -0.6604 | -0.92797 | -0.39291 |
| Slide | 100973270157 | PC13 | t-test | 5.03e-05 | 0.4870 | 0.21884 | 0.75520 |
| Slide | 101070190109 | PC13 | t-test | 5.06e-03 | -0.3509 | -0.63064 | -0.07113 |
| Slide | 100994770033 | PC13 | t-test | 8.69e-09 | 0.7211 | 0.44200 | 1.00026 |
| Slide | 200078650097 | PC13 | t-test | 1.71e-03 | 0.3760 | 0.10818 | 0.64372 |
| Slide | 200090270100 | PC13 | t-test | 9.42e-03 | 0.3113 | 0.04328 | 0.57926 |
| Slide | 200090270158 | PC13 | t-test | 7.15e-03 | 0.3225 | 0.05451 | 0.59043 |
| Slide | 200090280007 | PC13 | t-test | 7.19e-05 | 0.5503 | 0.24078 | 0.85974 |
| Slide | 200090280009 | PC13 | t-test | 3.92e-05 | 0.5391 | 0.24645 | 0.83169 |
| Slide | 200078650152 | PC13 | t-test | 4.09e-05 | -0.5129 | -0.79195 | -0.23379 |
| Slide | 200078650193 | PC13 | t-test | 8.90e-03 | 0.3275 | 0.04763 | 0.60730 |
| Slide | 200078650194 | PC13 | t-test | 2.65e-04 | 0.4783 | 0.18537 | 0.77118 |
| Slide | 200078650001 | PC13 | t-test | 7.37e-04 | 0.5300 | 0.17923 | 0.88086 |
| sentrix_row | PC13 | F-test | 3.34e-03 | 3.5546 | |||
| sentrix_row | 1 | PC13 | t-test | 4.17e-04 | -0.0907 | -0.14764 | -0.03367 |
| Sex | PC13 | F-test | 5.84e-04 | 11.8655 | |||
| Sex | M | PC13 | t-test | 1.25e-03 | -0.0655 | -0.10945 | -0.02150 |
| Sex | F | PC13 | t-test | 6.77e-04 | 0.0676 | 0.02415 | 0.11095 |
| Batch | PC14 | F-test | 8.43e-04 | 11.1799 | |||
| Batch | 1 | PC14 | t-test | 6.94e-04 | 0.0639 | 0.02288 | 0.10491 |
| Batch | 2 | PC14 | t-test | 7.61e-03 | -0.0506 | -0.09182 | -0.00936 |
| Slide | PC14 | F-test | 1.21e-30 | 3.0735 | |||
| Slide | 3998888008 | PC14 | t-test | 1.92e-05 | -0.4822 | -0.73392 | -0.23042 |
| Slide | 3998888041 | PC14 | t-test | 8.99e-03 | -0.3088 | -0.57296 | -0.04455 |
| Slide | 3998888061 | PC14 | t-test | 6.84e-03 | -0.3055 | -0.55804 | -0.05305 |
| Slide | 3998888068 | PC14 | t-test | 6.94e-03 | 0.3061 | 0.05266 | 0.55956 |
| Slide | 3998888071 | PC14 | t-test | 2.68e-03 | 0.3541 | 0.09053 | 0.61760 |
| Slide | 101070190062 | PC14 | t-test | 3.62e-03 | 0.3286 | 0.07622 | 0.58106 |
| Slide | 100973270083 | PC14 | t-test | 4.66e-06 | 0.5208 | 0.26710 | 0.77457 |
| Slide | 100973270085 | PC14 | t-test | 1.89e-03 | 0.3672 | 0.10318 | 0.63129 |
| Slide | 100973270089 | PC14 | t-test | 2.59e-03 | 0.3553 | 0.09172 | 0.61878 |
| Slide | 100973270094 | PC14 | t-test | 6.14e-03 | 0.3232 | 0.05958 | 0.58687 |
| Slide | 100973270100 | PC14 | t-test | 1.39e-07 | 0.5945 | 0.34291 | 0.84614 |
| Slide | 100973270128 | PC14 | t-test | 8.32e-04 | 0.3940 | 0.13061 | 0.65737 |
| Slide | 101070190122 | PC14 | t-test | 3.34e-03 | 0.3461 | 0.08250 | 0.60963 |
| Slide | 101070190018 | PC14 | t-test | 5.16e-03 | 0.3307 | 0.06645 | 0.59488 |
| Slide | 100994770033 | PC14 | t-test | 4.21e-07 | -0.5990 | -0.86303 | -0.33503 |
| Slide | 101070190038 | PC14 | t-test | 7.76e-03 | 0.3293 | 0.05284 | 0.60579 |
| Slide | 101103430112 | PC14 | t-test | 1.69e-04 | 0.4263 | 0.17318 | 0.67938 |
| Slide | 101103430113 | PC14 | t-test | 5.01e-03 | 0.3310 | 0.06737 | 0.59460 |
| Slide | 200078650003 | PC14 | t-test | 8.56e-03 | -0.3102 | -0.57384 | -0.04647 |
| Slide | 200090280007 | PC14 | t-test | 2.37e-03 | -0.3982 | -0.69088 | -0.10547 |
| Slide | 200090270021 | PC14 | t-test | 3.50e-06 | -0.6399 | -0.94764 | -0.33214 |
| Slide | 200078650041 | PC14 | t-test | 2.48e-03 | -0.3568 | -0.62030 | -0.09324 |
| Slide | 200078650051 | PC14 | t-test | 1.97e-08 | -0.6627 | -0.92565 | -0.39976 |
| Slide | 200078650109 | PC14 | t-test | 4.37e-03 | -0.3362 | -0.59979 | -0.07260 |
| Slide | 200078650112 | PC14 | t-test | 9.83e-03 | -0.3193 | -0.59583 | -0.04283 |
| Slide | 200078650187 | PC14 | t-test | 4.80e-03 | -0.3333 | -0.59747 | -0.06915 |
| Slide | PC15 | F-test | 5.56e-35 | 3.2997 | |||
| Slide | 3998888170 | PC15 | t-test | 3.83e-04 | 0.3966 | 0.14717 | 0.64610 |
| Slide | 3998888171 | PC15 | t-test | 9.99e-03 | 0.2999 | 0.03967 | 0.56003 |
| Slide | 3998888008 | PC15 | t-test | 5.40e-03 | -0.3100 | -0.55914 | -0.06095 |
| Slide | 3998888042 | PC15 | t-test | 6.00e-03 | -0.3071 | -0.55680 | -0.05731 |
| Slide | 101070190016 | PC15 | t-test | 8.44e-03 | 0.3065 | 0.04639 | 0.56671 |
| Slide | 101103430091 | PC15 | t-test | 1.69e-04 | 0.4188 | 0.17010 | 0.66743 |
| Slide | 101103430092 | PC15 | t-test | 1.98e-05 | 0.4985 | 0.23777 | 0.75914 |
| Slide | 3998919058 | PC15 | t-test | 1.79e-03 | -0.3634 | -0.62336 | -0.10343 |
| Slide | 100973330047 | PC15 | t-test | 5.79e-03 | -0.3084 | -0.55813 | -0.05860 |
| Slide | 100973330082 | PC15 | t-test | 6.13e-03 | -0.3055 | -0.55459 | -0.05638 |
| Slide | 100973270083 | PC15 | t-test | 5.70e-03 | -0.3101 | -0.56079 | -0.05938 |
| Slide | 100973270128 | PC15 | t-test | 4.37e-04 | -0.4090 | -0.66877 | -0.14921 |
| Slide | 100973330037 | PC15 | t-test | 6.05e-03 | 0.3194 | 0.05932 | 0.57956 |
| Slide | 100973330048 | PC15 | t-test | 1.54e-05 | 0.4825 | 0.23340 | 0.73155 |
| Slide | 101070190110 | PC15 | t-test | 3.70e-03 | 0.3235 | 0.07443 | 0.57253 |
| Slide | 101070190033 | PC15 | t-test | 4.67e-03 | 0.3292 | 0.06910 | 0.58927 |
| Slide | 101070190038 | PC15 | t-test | 1.52e-06 | 0.5867 | 0.31453 | 0.85878 |
| Slide | 101070190137 | PC15 | t-test | 9.92e-04 | 0.4233 | 0.13608 | 0.71042 |
| Slide | 101103430112 | PC15 | t-test | 3.89e-04 | 0.3960 | 0.14666 | 0.64526 |
| Slide | 101103430114 | PC15 | t-test | 1.08e-05 | 0.5360 | 0.26413 | 0.80788 |
| Slide | 101103430118 | PC15 | t-test | 2.39e-03 | 0.3393 | 0.08961 | 0.58895 |
| Slide | 200078650136 | PC15 | t-test | 8.50e-03 | 0.3063 | 0.04613 | 0.56646 |
| Slide | 200078650040 | PC15 | t-test | 3.05e-04 | -0.4403 | -0.71261 | -0.16792 |
| Slide | 200090270100 | PC15 | t-test | 1.24e-03 | -0.3598 | -0.60875 | -0.11092 |
| Slide | 200090280019 | PC15 | t-test | 3.82e-04 | -0.3957 | -0.64443 | -0.14690 |
| sentrix_row | PC15 | F-test | 7.57e-17 | 17.3725 | |||
| sentrix_row | 2 | PC15 | t-test | 7.00e-05 | -0.0977 | -0.15216 | -0.04318 |
| sentrix_row | 3 | PC15 | t-test | 3.38e-06 | -0.1109 | -0.16376 | -0.05802 |
| sentrix_row | 6 | PC15 | t-test | 5.10e-16 | 0.1947 | 0.14182 | 0.24756 |
| Slide | PC16 | F-test | 1.20e-14 | 2.1860 | |||
| Slide | 3998888041 | PC16 | t-test | 1.37e-03 | -0.3548 | -0.60255 | -0.10708 |
| Slide | 101070190016 | PC16 | t-test | 4.32e-04 | 0.3901 | 0.14252 | 0.63771 |
| Slide | 3998920007 | PC16 | t-test | 1.15e-04 | -0.4092 | -0.64615 | -0.17225 |
| Slide | 100973270085 | PC16 | t-test | 8.10e-04 | -0.3713 | -0.61898 | -0.12364 |
| Slide | 100973270100 | PC16 | t-test | 2.82e-03 | -0.3172 | -0.55452 | -0.07985 |
| Slide | 100973330037 | PC16 | t-test | 1.51e-03 | 0.3530 | 0.10443 | 0.60165 |
| Slide | 101070190071 | PC16 | t-test | 2.66e-04 | 0.3895 | 0.15093 | 0.62812 |
| Slide | 101070190088 | PC16 | t-test | 3.56e-03 | 0.3232 | 0.07540 | 0.57110 |
| Slide | 200078650088 | PC16 | t-test | 1.17e-05 | -0.4854 | -0.73255 | -0.23827 |
| Slide | 200078650152 | PC16 | t-test | 3.64e-03 | -0.3246 | -0.57407 | -0.07508 |
| Slide | 200078650041 | PC16 | t-test | 7.24e-03 | -0.2996 | -0.54900 | -0.05024 |
| Slide | 200078650129 | PC16 | t-test | 2.66e-04 | -0.4041 | -0.65165 | -0.15658 |
| sentrix_row | PC16 | F-test | 4.67e-03 | 3.3945 | |||
| sentrix_row | 6 | PC16 | t-test | 4.14e-05 | 0.0936 | 0.04298 | 0.14421 |
| Batch | PC17 | F-test | 2.76e-05 | 17.6665 | |||
| Batch | 1 | PC17 | t-test | 3.67e-05 | -0.0646 | -0.09868 | -0.03056 |
| Batch | 2 | PC17 | t-test | 1.61e-06 | 0.0738 | 0.04040 | 0.10714 |
| Slide | PC17 | F-test | 4.81e-30 | 3.0419 | |||
| Slide | 3998888171 | PC17 | t-test | 7.84e-03 | -0.2544 | -0.46818 | -0.04052 |
| Slide | 3998888087 | PC17 | t-test | 4.61e-04 | -0.3212 | -0.52601 | -0.11635 |
| Slide | 3998888176 | PC17 | t-test | 5.43e-03 | 0.2547 | 0.04998 | 0.45947 |
| Slide | 101070190002 | PC17 | t-test | 2.57e-03 | -0.2761 | -0.48079 | -0.07145 |
| Slide | 3998888023 | PC17 | t-test | 3.41e-05 | -0.3959 | -0.60913 | -0.18264 |
| Slide | 3998919138 | PC17 | t-test | 5.10e-03 | -0.2570 | -0.46212 | -0.05189 |
| Slide | 3998920007 | PC17 | t-test | 2.41e-04 | -0.3361 | -0.54052 | -0.13167 |
| Slide | 100973330088 | PC17 | t-test | 1.92e-03 | -0.2841 | -0.48876 | -0.07949 |
| Slide | 100973270094 | PC17 | t-test | 1.23e-03 | 0.3100 | 0.09571 | 0.52423 |
| Slide | 100973270100 | PC17 | t-test | 1.33e-03 | 0.2949 | 0.08957 | 0.50018 |
| Slide | 100973330003 | PC17 | t-test | 1.35e-04 | 0.3511 | 0.14574 | 0.55639 |
| Slide | 100973330044 | PC17 | t-test | 2.72e-03 | -0.2891 | -0.50460 | -0.07361 |
| Slide | 101070190051 | PC17 | t-test | 7.99e-03 | 0.2537 | 0.03991 | 0.46758 |
| Slide | 101070190109 | PC17 | t-test | 6.12e-03 | 0.2627 | 0.04849 | 0.47693 |
| Slide | 101070190115 | PC17 | t-test | 2.69e-05 | 0.4205 | 0.19693 | 0.64408 |
| Slide | 101130760004 | PC17 | t-test | 6.53e-03 | 0.2492 | 0.04440 | 0.45393 |
| Slide | 100994770033 | PC17 | t-test | 2.62e-06 | -0.4497 | -0.66314 | -0.23618 |
| Slide | 101070190071 | PC17 | t-test | 5.78e-05 | 0.3680 | 0.16372 | 0.57228 |
| Slide | 101070190161 | PC17 | t-test | 1.46e-03 | 0.2921 | 0.08704 | 0.49720 |
| Slide | 101130760008 | PC17 | t-test | 5.47e-03 | 0.2545 | 0.04975 | 0.45924 |
| Slide | 200078650234 | PC17 | t-test | 8.49e-03 | 0.2416 | 0.03641 | 0.44677 |
| Slide | 200078650003 | PC17 | t-test | 2.99e-08 | -0.5307 | -0.74410 | -0.31736 |
| Slide | 200078650192 | PC17 | t-test | 8.07e-06 | 0.4282 | 0.21412 | 0.64227 |
| Slide | 200078650021 | PC17 | t-test | 1.38e-04 | -0.4034 | -0.63978 | -0.16712 |
| Slide | 200078650045 | PC17 | t-test | 8.32e-03 | -0.2418 | -0.44654 | -0.03697 |
| Slide | 200078650001 | PC17 | t-test | 1.24e-04 | -0.4592 | -0.72641 | -0.19195 |
| Slide | 200078650041 | PC17 | t-test | 9.54e-04 | -0.3178 | -0.53265 | -0.10288 |
| Slide | 200078650089 | PC17 | t-test | 6.39e-05 | -0.4005 | -0.62421 | -0.17687 |
| sentrix_row | PC17 | F-test | 3.26e-03 | 3.5670 | |||
| sentrix_row | 1 | PC17 | t-test | 3.59e-05 | -0.0814 | -0.12505 | -0.03772 |
| Sex | F | PC17 | t-test | 5.04e-03 | 0.0436 | 0.00963 | 0.07747 |
| Batch | PC18 | F-test | 5.12e-07 | 25.3925 | |||
| Batch | 1 | PC18 | t-test | 1.85e-06 | 0.0682 | 0.03714 | 0.09935 |
| Batch | 2 | PC18 | t-test | 2.24e-07 | -0.0757 | -0.10738 | -0.04397 |
| Slide | PC18 | F-test | 1.72e-137 | 8.7103 | |||
| Slide | 3998888067 | PC18 | t-test | 5.09e-03 | -0.2531 | -0.45497 | -0.05114 |
| Slide | 3998888109 | PC18 | t-test | 1.16e-05 | -0.3956 | -0.59689 | -0.19430 |
| Slide | 3998888170 | PC18 | t-test | 1.77e-03 | -0.2704 | -0.46367 | -0.07714 |
| Slide | 3998888177 | PC18 | t-test | 7.66e-03 | -0.2307 | -0.42414 | -0.03733 |
| Slide | 3998888008 | PC18 | t-test | 4.21e-03 | -0.2486 | -0.44266 | -0.05446 |
| Slide | 3998888045 | PC18 | t-test | 2.90e-03 | -0.2690 | -0.47083 | -0.06712 |
| Slide | 3998888068 | PC18 | t-test | 3.59e-06 | -0.4010 | -0.59406 | -0.20795 |
| Slide | 3998888081 | PC18 | t-test | 3.55e-03 | -0.2522 | -0.44553 | -0.05886 |
| Slide | 3998888083 | PC18 | t-test | 3.31e-04 | -0.3103 | -0.50344 | -0.11723 |
| Slide | 3998888086 | PC18 | t-test | 2.62e-05 | -0.3801 | -0.58192 | -0.17832 |
| Slide | 101103430091 | PC18 | t-test | 3.97e-03 | 0.2492 | 0.05585 | 0.44253 |
| Slide | 3998919043 | PC18 | t-test | 3.46e-04 | -0.3104 | -0.50410 | -0.11662 |
| Slide | 3998919058 | PC18 | t-test | 2.43e-04 | -0.3313 | -0.53287 | -0.12965 |
| Slide | 3998919138 | PC18 | t-test | 3.75e-03 | -0.2507 | -0.44406 | -0.05738 |
| Slide | 100973270154 | PC18 | t-test | 3.58e-09 | 0.5107 | 0.31803 | 0.70338 |
| Slide | 100973270155 | PC18 | t-test | 1.39e-05 | 0.4110 | 0.19989 | 0.62207 |
| Slide | 100973330047 | PC18 | t-test | 9.03e-07 | 0.4248 | 0.23192 | 0.61766 |
| Slide | 100973330054 | PC18 | t-test | 6.26e-03 | 0.2470 | 0.04505 | 0.44891 |
| Slide | 100973330065 | PC18 | t-test | 1.39e-07 | 0.4766 | 0.27490 | 0.67837 |
| Slide | 100973330082 | PC18 | t-test | 1.09e-08 | 0.4930 | 0.30088 | 0.68503 |
| Slide | 100973330088 | PC18 | t-test | 1.23e-03 | 0.2794 | 0.08621 | 0.47268 |
| Slide | 101070190070 | PC18 | t-test | 1.45e-06 | 0.4160 | 0.22342 | 0.60855 |
| Slide | 100973270089 | PC18 | t-test | 7.87e-04 | 0.3032 | 0.10143 | 0.50488 |
| Slide | 100973270094 | PC18 | t-test | 8.03e-03 | 0.2395 | 0.03753 | 0.44144 |
| Slide | 100973270100 | PC18 | t-test | 4.56e-03 | 0.2454 | 0.05203 | 0.43874 |
| Slide | 100973270128 | PC18 | t-test | 4.73e-03 | 0.2558 | 0.05342 | 0.45817 |
| Slide | 101070190089 | PC18 | t-test | 1.41e-03 | 0.2767 | 0.08304 | 0.47034 |
| Slide | 101070190099 | PC18 | t-test | 1.08e-04 | 0.3346 | 0.14160 | 0.52758 |
| Slide | 101070190111 | PC18 | t-test | 5.37e-04 | 0.3284 | 0.11647 | 0.54030 |
| Slide | 101070190115 | PC18 | t-test | 4.27e-07 | 0.4778 | 0.26712 | 0.68853 |
| Slide | 101130760004 | PC18 | t-test | 1.66e-05 | 0.3729 | 0.17966 | 0.56610 |
| Slide | 100994770033 | PC18 | t-test | 4.35e-15 | 0.7066 | 0.50670 | 0.90641 |
| Slide | 101070190071 | PC18 | t-test | 3.78e-04 | 0.3074 | 0.11426 | 0.50049 |
| Slide | 101070190088 | PC18 | t-test | 6.49e-03 | 0.2459 | 0.04398 | 0.44786 |
| Slide | 101070190137 | PC18 | t-test | 1.01e-03 | 0.3288 | 0.10538 | 0.55216 |
| Slide | 101070190161 | PC18 | t-test | 7.69e-03 | 0.2306 | 0.03722 | 0.42403 |
| Slide | 101130760008 | PC18 | t-test | 4.71e-06 | 0.3953 | 0.20264 | 0.58800 |
| Slide | 200078650086 | PC18 | t-test | 1.46e-05 | -0.3919 | -0.59371 | -0.19015 |
| Slide | 200078650097 | PC18 | t-test | 5.28e-04 | -0.3007 | -0.49450 | -0.10693 |
| Slide | 200078650115 | PC18 | t-test | 5.16e-03 | -0.2527 | -0.45458 | -0.05075 |
| Slide | 200078650040 | PC18 | t-test | 1.35e-04 | -0.3635 | -0.57605 | -0.15085 |
| Slide | 200078650090 | PC18 | t-test | 1.53e-04 | -0.3602 | -0.57268 | -0.14773 |
| Slide | 200090270102 | PC18 | t-test | 2.80e-03 | -0.2700 | -0.47181 | -0.06810 |
| Slide | 200090270152 | PC18 | t-test | 5.16e-05 | -0.3830 | -0.59427 | -0.17181 |
| Slide | 200090280005 | PC18 | t-test | 2.16e-03 | -0.2653 | -0.45863 | -0.07206 |
| Slide | 200090280009 | PC18 | t-test | 1.09e-03 | -0.3093 | -0.52081 | -0.09770 |
| Slide | 200078650189 | PC18 | t-test | 1.03e-03 | -0.2839 | -0.47714 | -0.09071 |
| Slide | 200078650109 | PC18 | t-test | 3.23e-04 | -0.3264 | -0.52905 | -0.12369 |
| Slide | 200078650129 | PC18 | t-test | 4.12e-03 | -0.2608 | -0.46396 | -0.05765 |
| Slide | 200078650232 | PC18 | t-test | 3.71e-03 | -0.2511 | -0.44441 | -0.05773 |
| Slide | 200078650237 | PC18 | t-test | 4.86e-07 | -0.4546 | -0.65606 | -0.25315 |
| Slide | 200078650240 | PC18 | t-test | 2.66e-03 | -0.2599 | -0.45324 | -0.06663 |
| sentrix_row | PC18 | F-test | 6.22e-08 | 8.4637 | |||
| sentrix_row | 3 | PC18 | t-test | 2.02e-04 | -0.0694 | -0.11083 | -0.02799 |
| sentrix_row | 4 | PC18 | t-test | 1.54e-04 | -0.0720 | -0.11417 | -0.02980 |
| sentrix_row | 6 | PC18 | t-test | 1.71e-06 | 0.0889 | 0.04772 | 0.12999 |
| Batch | 2 | PC19 | t-test | 6.63e-03 | 0.0311 | 0.00619 | 0.05603 |
| Slide | PC19 | F-test | 1.05e-57 | 4.4572 | |||
| Slide | 3998888019 | PC19 | t-test | 2.95e-07 | -0.3362 | -0.48236 | -0.18999 |
| Slide | 3998888067 | PC19 | t-test | 1.51e-04 | -0.2586 | -0.41100 | -0.10623 |
| Slide | 3998888170 | PC19 | t-test | 6.60e-06 | -0.2933 | -0.43848 | -0.14806 |
| Slide | 3998888171 | PC19 | t-test | 3.21e-03 | -0.2006 | -0.35270 | -0.04848 |
| Slide | 3998888008 | PC19 | t-test | 3.76e-04 | 0.2363 | 0.08789 | 0.38465 |
| Slide | 3998888022 | PC19 | t-test | 8.82e-03 | 0.1795 | 0.02630 | 0.33276 |
| Slide | 3998888083 | PC19 | t-test | 2.68e-03 | 0.1961 | 0.05014 | 0.34205 |
| Slide | 3998888087 | PC19 | t-test | 1.08e-11 | 0.4415 | 0.29704 | 0.58593 |
| Slide | 101070190050 | PC19 | t-test | 6.99e-03 | -0.1765 | -0.32275 | -0.03024 |
| Slide | 101103430092 | PC19 | t-test | 8.06e-03 | -0.1807 | -0.33319 | -0.02825 |
| Slide | 101103430129 | PC19 | t-test | 7.34e-04 | 0.2200 | 0.07447 | 0.36559 |
| Slide | 3998919058 | PC19 | t-test | 4.41e-03 | -0.1938 | -0.34593 | -0.04166 |
| Slide | 100973330082 | PC19 | t-test | 5.15e-03 | 0.1824 | 0.03668 | 0.32809 |
| Slide | 101070190049 | PC19 | t-test | 1.93e-03 | -0.2021 | -0.34771 | -0.05644 |
| Slide | 100973270083 | PC19 | t-test | 2.71e-07 | -0.3357 | -0.48123 | -0.19017 |
| Slide | 100973270100 | PC19 | t-test | 9.15e-04 | -0.2183 | -0.36547 | -0.07122 |
| Slide | 100973270128 | PC19 | t-test | 5.66e-04 | -0.2359 | -0.38883 | -0.08306 |
| Slide | 101070190051 | PC19 | t-test | 2.87e-03 | -0.2032 | -0.35560 | -0.05087 |
| Slide | 101070190109 | PC19 | t-test | 9.35e-04 | 0.2257 | 0.07335 | 0.37808 |
| Slide | 100994770033 | PC19 | t-test | 2.91e-04 | -0.2474 | -0.39996 | -0.09493 |
| Slide | 101070190071 | PC19 | t-test | 8.32e-03 | 0.1725 | 0.02638 | 0.31852 |
| Slide | 200078650161 | PC19 | t-test | 1.07e-03 | 0.2145 | 0.06806 | 0.36094 |
| Slide | 200078650234 | PC19 | t-test | 3.38e-05 | 0.2728 | 0.12597 | 0.41972 |
| Slide | 200078650257 | PC19 | t-test | 4.02e-03 | 0.1882 | 0.04200 | 0.33434 |
| Slide | 200078650003 | PC19 | t-test | 5.88e-09 | -0.3969 | -0.54882 | -0.24504 |
| Slide | 200078650086 | PC19 | t-test | 5.26e-03 | -0.1900 | -0.34210 | -0.03781 |
| Slide | 200078650192 | PC19 | t-test | 4.37e-05 | -0.2779 | -0.42966 | -0.12611 |
| Slide | 200078650110 | PC19 | t-test | 6.66e-05 | 0.2618 | 0.11526 | 0.40840 |
| Slide | 200090270100 | PC19 | t-test | 2.08e-10 | 0.4149 | 0.26966 | 0.56019 |
| Slide | 200090280009 | PC19 | t-test | 2.74e-04 | 0.2595 | 0.10022 | 0.41881 |
| Slide | 200078650170 | PC19 | t-test | 7.64e-05 | 0.2576 | 0.11219 | 0.40298 |
| Slide | 200078650173 | PC19 | t-test | 2.06e-09 | 0.4111 | 0.25839 | 0.56383 |
| Slide | 200078650001 | PC19 | t-test | 5.34e-03 | -0.2374 | -0.42798 | -0.04691 |
| Slide | 200078650189 | PC19 | t-test | 2.12e-03 | -0.2007 | -0.34657 | -0.05474 |
| Slide | 200078650041 | PC19 | t-test | 2.05e-06 | -0.3226 | -0.47412 | -0.17105 |
| Slide | 200078650064 | PC19 | t-test | 6.38e-07 | -0.3567 | -0.51644 | -0.19697 |
| Slide | 200078650109 | PC19 | t-test | 4.07e-04 | -0.2405 | -0.39245 | -0.08855 |
| Slide | 200078650159 | PC19 | t-test | 3.09e-03 | 0.2014 | 0.04927 | 0.35348 |
| sentrix_row | PC19 | F-test | 3.56e-04 | 4.6005 | |||
| sentrix_row | 1 | PC19 | t-test | 1.37e-06 | -0.0685 | -0.09986 | -0.03706 |
| Batch | PC20 | F-test | 1.95e-11 | 45.5763 | |||
| Batch | 1 | PC20 | t-test | 1.93e-16 | -0.0907 | -0.11452 | -0.06688 |
| Batch | 2 | PC20 | t-test | 7.99e-10 | 0.0692 | 0.04480 | 0.09357 |
| Slide | PC20 | F-test | 9.21e-31 | 3.0797 | |||
| Slide | 3998888072 | PC20 | t-test | 3.79e-04 | -0.2296 | -0.37394 | -0.08534 |
| Slide | 3998888059 | PC20 | t-test | 1.06e-03 | -0.2321 | -0.39042 | -0.07369 |
| Slide | 3998888068 | PC20 | t-test | 3.34e-03 | 0.1893 | 0.04514 | 0.33352 |
| Slide | 3998888087 | PC20 | t-test | 1.18e-05 | -0.2822 | -0.42602 | -0.13846 |
| Slide | 101070190002 | PC20 | t-test | 2.43e-03 | -0.1956 | -0.33979 | -0.05146 |
| Slide | 101070190016 | PC20 | t-test | 1.92e-05 | -0.2888 | -0.43955 | -0.13797 |
| Slide | 101070190031 | PC20 | t-test | 1.17e-05 | -0.2839 | -0.42840 | -0.13935 |
| Slide | 3998888065 | PC20 | t-test | 3.91e-03 | -0.1862 | -0.33039 | -0.04199 |
| Slide | 3998888069 | PC20 | t-test | 1.33e-03 | -0.2070 | -0.35110 | -0.06285 |
| Slide | 100973270154 | PC20 | t-test | 1.61e-03 | -0.2035 | -0.34762 | -0.05934 |
| Slide | 100973330054 | PC20 | t-test | 2.56e-03 | -0.2032 | -0.35374 | -0.05265 |
| Slide | 100973270089 | PC20 | t-test | 4.28e-03 | -0.1930 | -0.34393 | -0.04202 |
| Slide | 100973330044 | PC20 | t-test | 1.29e-04 | -0.2612 | -0.41351 | -0.10883 |
| Slide | 100973330048 | PC20 | t-test | 9.80e-03 | -0.1674 | -0.31219 | -0.02251 |
| Slide | 101070190099 | PC20 | t-test | 1.51e-04 | -0.2444 | -0.38833 | -0.10039 |
| Slide | 101070190071 | PC20 | t-test | 4.45e-03 | -0.1847 | -0.32981 | -0.03956 |
| Slide | 101070190121 | PC20 | t-test | 1.90e-04 | -0.2417 | -0.38642 | -0.09706 |
| Slide | 200078650218 | PC20 | t-test | 3.99e-03 | 0.1940 | 0.04341 | 0.34457 |
| Slide | 200078650257 | PC20 | t-test | 7.24e-04 | 0.2180 | 0.07395 | 0.36211 |
| Slide | 200078650003 | PC20 | t-test | 1.27e-04 | 0.2585 | 0.10787 | 0.40921 |
| Slide | 200078650021 | PC20 | t-test | 1.45e-03 | 0.2383 | 0.07108 | 0.40553 |
| Slide | 200078650040 | PC20 | t-test | 5.70e-03 | -0.1980 | -0.35816 | -0.03794 |
| Slide | 200090270152 | PC20 | t-test | 4.69e-03 | 0.1998 | 0.04187 | 0.35767 |
| Slide | 200090280009 | PC20 | t-test | 2.60e-06 | 0.3322 | 0.17451 | 0.48981 |
| Slide | 200090280019 | PC20 | t-test | 3.47e-05 | 0.2674 | 0.12325 | 0.41165 |
| Slide | 200078650064 | PC20 | t-test | 1.01e-04 | 0.2745 | 0.11688 | 0.43207 |
| Slide | 200078650237 | PC20 | t-test | 5.11e-03 | 0.1887 | 0.03806 | 0.33925 |
| sentrix_row | PC20 | F-test | 2.20e-03 | 3.7524 | |||
| sentrix_row | 1 | PC20 | t-test | 1.48e-04 | -0.0528 | -0.08361 | -0.02192 |
| sentrix_row | 6 | PC20 | t-test | 4.48e-03 | -0.0403 | -0.07173 | -0.00883 |
| Sex | F | PC20 | t-test | 8.51e-04 | -0.0371 | -0.06145 | -0.01283 |
The following plots show the first 3 principal components of the most variable probes colored by batch variables. Batch variables with more than 10 levels are omitted.
The most variable normalized probes were extracted, decomposed into principal components and each component regressed against each batch variable. If the normalization has performed well then there will be no associations between normalized probe PCs and batch variables. Horizontal dotted line denotes \(p = 0.05\) in log-scale.
The following plots show regression coefficients when each principal component is regressed against each batch variable level along with 95% confidence intervals. Cases significantly different from zero are coloured red (p < 0.01, t-test).
| batch.variable | batch.value | principal.component | test | p.value | estimate | lower | upper |
|---|---|---|---|---|---|---|---|
| Sample.Set | PC1 | F-test | 6.32e-28 | 64.752 | |||
| Sample.Set | George_Mellick | PC1 | t-test | 5.44e-29 | 5.460 | 4.4542 | 6.4648 |
| Sample.Set | Ian Hickie | PC1 | t-test | 1.57e-05 | -4.109 | -6.2300 | -1.9874 |
| Sample.Set | Martin_Kennedy | PC1 | t-test | 2.28e-24 | -5.272 | -6.4095 | -4.1352 |
| Slide | PC1 | F-test | 2.48e-03 | 1.357 | |||
| Slide | 3998920007 | PC1 | t-test | 8.29e-03 | -5.462 | -10.0862 | -0.8375 |
| Slide | 100973330082 | PC1 | t-test | 3.48e-03 | -6.056 | -10.6888 | -1.4234 |
| Sex | PC1 | F-test | 4.07e-08 | 30.365 | |||
| Sex | M | PC1 | t-test | 6.11e-07 | -1.696 | -2.4314 | -0.9602 |
| Sex | F | PC1 | t-test | 2.13e-09 | 2.022 | 1.2870 | 2.7571 |
| AGE_all | PC1 | F-test | 7.21e-03 | 7.236 | |||
| Batch | PC2 | F-test | 3.18e-04 | 13.008 | |||
| Batch | 1 | PC2 | t-test | 1.20e-03 | -0.645 | -1.0788 | -0.2121 |
| Batch | 2 | PC2 | t-test | 6.98e-20 | -2.007 | -2.4800 | -1.5345 |
| Sample.Set | PC2 | F-test | 2.29e-05 | 10.743 | |||
| Sample.Set | George_Mellick | PC2 | t-test | 7.71e-06 | -1.618 | -2.3735 | -0.8635 |
| Slide | PC2 | F-test | 4.77e-12 | 2.025 | |||
| Slide | 3998888067 | PC2 | t-test | 7.51e-03 | -2.325 | -4.2693 | -0.3811 |
| Slide | 3998888061 | PC2 | t-test | 1.03e-06 | -4.171 | -6.0744 | -2.2679 |
| Slide | 3998888071 | PC2 | t-test | 6.15e-03 | 2.376 | 0.4378 | 4.3137 |
| Slide | 101070190050 | PC2 | t-test | 4.00e-05 | -3.522 | -5.4357 | -1.6081 |
| Slide | 101103430091 | PC2 | t-test | 3.09e-03 | -2.484 | -4.3604 | -0.6078 |
| Slide | 101070190061 | PC2 | t-test | 1.26e-03 | 2.795 | 0.8584 | 4.7311 |
| Slide | 101070190062 | PC2 | t-test | 1.56e-03 | 2.625 | 0.7707 | 4.4800 |
| Slide | 101070190063 | PC2 | t-test | 8.02e-06 | 4.060 | 2.0310 | 6.0883 |
| Slide | 101070190070 | PC2 | t-test | 9.14e-03 | 2.169 | 0.3091 | 4.0292 |
| Slide | 101070190150 | PC2 | t-test | 4.35e-03 | 2.373 | 0.5133 | 4.2319 |
| Slide | 101130760005 | PC2 | t-test | 2.43e-04 | 3.045 | 1.1918 | 4.8973 |
| Slide | 100973270083 | PC2 | t-test | 6.64e-08 | -4.505 | -6.3633 | -2.6466 |
| Slide | 100973270089 | PC2 | t-test | 1.06e-04 | -3.422 | -5.3934 | -1.4513 |
| Slide | 100973270094 | PC2 | t-test | 1.34e-05 | -3.814 | -5.7685 | -1.8587 |
| Slide | 100973270100 | PC2 | t-test | 2.24e-04 | -3.072 | -4.9314 | -1.2133 |
| Slide | 100973270128 | PC2 | t-test | 2.62e-13 | -6.485 | -8.4541 | -4.5163 |
| Slide | 100973270129 | PC2 | t-test | 7.62e-12 | -5.874 | -7.7815 | -3.9675 |
| Slide | 100973270135 | PC2 | t-test | 4.06e-03 | -2.392 | -4.2518 | -0.5314 |
| Slide | 100973270167 | PC2 | t-test | 3.11e-06 | -4.153 | -6.1399 | -2.1668 |
| Slide | 100973330003 | PC2 | t-test | 2.97e-05 | -3.533 | -5.4220 | -1.6448 |
| Slide | 100973330037 | PC2 | t-test | 1.17e-15 | -7.093 | -9.0561 | -5.1295 |
| Slide | 100973330043 | PC2 | t-test | 7.61e-12 | -6.066 | -8.0355 | -4.0970 |
| Slide | 100973330044 | PC2 | t-test | 1.88e-27 | -9.802 | -11.7874 | -7.8157 |
| Slide | 100973330048 | PC2 | t-test | 3.65e-11 | -5.691 | -7.6025 | -3.7789 |
| Slide | 100973330051 | PC2 | t-test | 1.61e-13 | -6.398 | -8.3225 | -4.4727 |
| Slide | 101070190089 | PC2 | t-test | 3.61e-05 | -3.480 | -5.3594 | -1.5997 |
| Slide | 101070190017 | PC2 | t-test | 2.93e-04 | -3.035 | -4.9061 | -1.1634 |
| Slide | 101070190018 | PC2 | t-test | 4.62e-06 | -4.026 | -5.9865 | -2.0657 |
| Slide | 101070190033 | PC2 | t-test | 2.34e-16 | -7.458 | -9.4730 | -5.4439 |
| Slide | 101070190115 | PC2 | t-test | 1.03e-03 | -2.990 | -5.0244 | -0.9553 |
| Slide | 101070190038 | PC2 | t-test | 1.90e-03 | -2.844 | -4.8902 | -0.7977 |
| Slide | 101070190088 | PC2 | t-test | 2.93e-03 | -2.597 | -4.5485 | -0.6465 |
| Slide | 200078650161 | PC2 | t-test | 2.93e-03 | -2.538 | -4.4436 | -0.6319 |
| Slide | 200078650218 | PC2 | t-test | 2.22e-12 | -6.254 | -8.2333 | -4.2750 |
| Slide | 200078650234 | PC2 | t-test | 4.57e-03 | -2.382 | -4.2580 | -0.5050 |
| Slide | 200078650257 | PC2 | t-test | 1.03e-04 | -3.272 | -5.1529 | -1.3903 |
| Slide | 200078650115 | PC2 | t-test | 3.33e-05 | -3.635 | -5.5893 | -1.6798 |
| Slide | 200078650136 | PC2 | t-test | 1.01e-03 | -2.884 | -4.8444 | -0.9236 |
| Slide | 200078650021 | PC2 | t-test | 4.20e-04 | -3.453 | -5.6389 | -1.2665 |
| Slide | 200078650040 | PC2 | t-test | 3.25e-03 | -2.708 | -4.7650 | -0.6518 |
| Slide | 200078650090 | PC2 | t-test | 4.98e-06 | -4.223 | -6.2856 | -2.1595 |
| Slide | 200078650110 | PC2 | t-test | 2.50e-03 | -2.580 | -4.4868 | -0.6729 |
| Slide | 200078650111 | PC2 | t-test | 5.85e-05 | -3.351 | -5.2117 | -1.4895 |
| Slide | 200090270158 | PC2 | t-test | 1.98e-03 | -2.666 | -4.5912 | -0.7405 |
| Slide | 200090280007 | PC2 | t-test | 1.64e-13 | -7.266 | -9.4531 | -5.0792 |
| Slide | 200090280009 | PC2 | t-test | 2.86e-03 | -2.735 | -4.7843 | -0.6858 |
| Slide | 200078650152 | PC2 | t-test | 8.76e-03 | -2.298 | -4.2570 | -0.3384 |
| Slide | 200078650194 | PC2 | t-test | 7.91e-06 | -4.149 | -6.2211 | -2.0771 |
| Slide | 200078650244 | PC2 | t-test | 7.71e-03 | -2.449 | -4.5026 | -0.3946 |
| Slide | 200078650255 | PC2 | t-test | 5.30e-04 | -3.082 | -5.0677 | -1.0954 |
| Slide | 200078650189 | PC2 | t-test | 6.10e-03 | -2.333 | -4.2339 | -0.4317 |
| Slide | 200090270021 | PC2 | t-test | 2.32e-04 | -3.780 | -6.0738 | -1.4867 |
| Slide | 200090280029 | PC2 | t-test | 2.26e-09 | -5.383 | -7.3880 | -3.3788 |
| Slide | 200090280040 | PC2 | t-test | 2.82e-03 | -2.520 | -4.4055 | -0.6345 |
| Slide | 200090280042 | PC2 | t-test | 4.89e-03 | -2.345 | -4.2082 | -0.4826 |
| Slide | 200078650051 | PC2 | t-test | 3.44e-05 | -3.692 | -5.6807 | -1.7025 |
| Slide | 200078650109 | PC2 | t-test | 2.53e-10 | -5.674 | -7.6692 | -3.6784 |
| Slide | 200078650112 | PC2 | t-test | 7.49e-08 | -5.057 | -7.1519 | -2.9623 |
| Slide | 200078650123 | PC2 | t-test | 7.89e-03 | -2.233 | -4.1120 | -0.3543 |
| Slide | 200078650187 | PC2 | t-test | 1.52e-03 | -2.788 | -4.7512 | -0.8238 |
| sentrix_col | 1 | PC2 | t-test | 1.11e-13 | -1.630 | -2.1040 | -1.1565 |
| sentrix_col | 2 | PC2 | t-test | 2.85e-07 | -1.029 | -1.4633 | -0.5940 |
| sentrix_row | 1 | PC2 | t-test | 7.43e-09 | -1.245 | -1.7217 | -0.7692 |
| sentrix_row | 2 | PC2 | t-test | 3.47e-09 | -1.279 | -1.7578 | -0.8004 |
| sentrix_row | 3 | PC2 | t-test | 3.40e-06 | -1.042 | -1.5388 | -0.5454 |
| sentrix_row | 4 | PC2 | t-test | 1.74e-14 | -1.745 | -2.2458 | -1.2434 |
| sentrix_row | 5 | PC2 | t-test | 5.41e-09 | -1.216 | -1.6771 | -0.7556 |
| sentrix_row | 6 | PC2 | t-test | 6.48e-12 | -1.492 | -1.9714 | -1.0131 |
| Sex | PC2 | F-test | 1.24e-05 | 19.207 | |||
| Sex | M | PC2 | t-test | 3.82e-21 | -2.152 | -2.6409 | -1.6641 |
| Batch | PC3 | F-test | 5.46e-07 | 25.268 | |||
| Batch | 1 | PC3 | t-test | 4.90e-11 | 0.944 | 0.6324 | 1.2549 |
| Batch | 2 | PC3 | t-test | 8.96e-06 | -0.616 | -0.9172 | -0.3148 |
| Sample.Set | PC3 | F-test | 2.07e-03 | 6.200 | |||
| Sample.Set | Martin_Kennedy | PC3 | t-test | 1.69e-06 | 1.007 | 0.5398 | 1.4740 |
| Slide | PC3 | F-test | 1.02e-12 | 2.067 | |||
| Slide | 3998888067 | PC3 | t-test | 5.94e-03 | 2.313 | 0.4339 | 4.1931 |
| Slide | 3998888072 | PC3 | t-test | 4.53e-04 | 2.828 | 1.0268 | 4.6293 |
| Slide | 3998888177 | PC3 | t-test | 2.53e-03 | 2.431 | 0.6322 | 4.2307 |
| Slide | 3998888180 | PC3 | t-test | 8.66e-03 | 2.121 | 0.3151 | 3.9267 |
| Slide | 3998888041 | PC3 | t-test | 1.09e-03 | 2.746 | 0.8683 | 4.6244 |
| Slide | 3998888068 | PC3 | t-test | 1.69e-06 | 3.847 | 2.0548 | 5.6401 |
| Slide | 3998888071 | PC3 | t-test | 1.87e-04 | 3.146 | 1.2655 | 5.0261 |
| Slide | 3998888176 | PC3 | t-test | 4.38e-05 | 3.287 | 1.4916 | 5.0829 |
| Slide | 101070190002 | PC3 | t-test | 8.52e-07 | -3.980 | -5.7832 | -2.1773 |
| Slide | 101103430120 | PC3 | t-test | 2.15e-03 | -2.580 | -4.4590 | -0.7017 |
| Slide | 101103430129 | PC3 | t-test | 8.11e-03 | -2.132 | -3.9328 | -0.3322 |
| Slide | 3998888017 | PC3 | t-test | 6.80e-06 | 3.778 | 1.9045 | 5.6509 |
| Slide | 3998920007 | PC3 | t-test | 2.72e-03 | 2.414 | 0.6142 | 4.2129 |
| Slide | 100973270154 | PC3 | t-test | 6.83e-04 | 2.797 | 0.9574 | 4.6369 |
| Slide | 101070190063 | PC3 | t-test | 4.77e-03 | 2.488 | 0.5175 | 4.4588 |
| Slide | 100973270135 | PC3 | t-test | 7.15e-06 | 3.743 | 1.8824 | 5.6030 |
| Slide | 101070190033 | PC3 | t-test | 9.97e-05 | 3.305 | 1.4087 | 5.2019 |
| Slide | 101070190038 | PC3 | t-test | 8.39e-03 | -2.325 | -4.2957 | -0.3533 |
| Slide | 200078650055 | PC3 | t-test | 7.21e-03 | -2.260 | -4.1396 | -0.3801 |
| Slide | 200078650118 | PC3 | t-test | 4.53e-03 | -2.387 | -4.2662 | -0.5075 |
| sentrix_row | PC3 | F-test | 2.09e-03 | 3.776 | |||
| sentrix_row | 1 | PC3 | t-test | 4.67e-04 | 0.606 | 0.2219 | 0.9909 |
| sentrix_row | 3 | PC3 | t-test | 1.45e-04 | 0.696 | 0.2898 | 1.1024 |
| Sex | PC3 | F-test | 1.28e-16 | 69.755 | |||
| Sex | M | PC3 | t-test | 3.39e-18 | 1.292 | 0.9724 | 1.6107 |
| Sex | F | PC3 | t-test | 7.87e-14 | -0.995 | -1.2835 | -0.7057 |
| AGE_all | PC3 | F-test | 8.72e-31 | 137.907 | |||
| Batch | PC4 | F-test | 4.82e-04 | 12.225 | |||
| Batch | 1 | PC4 | t-test | 2.34e-03 | -0.350 | -0.6000 | -0.0994 |
| Batch | 2 | PC4 | t-test | 3.69e-05 | 0.465 | 0.2202 | 0.7100 |
| Sample.Set | PC4 | F-test | 7.19e-03 | 4.948 | |||
| Sample.Set | Ian Hickie | PC4 | t-test | 7.05e-03 | 0.861 | 0.1474 | 1.5745 |
| Slide | PC4 | F-test | 3.45e-03 | 1.342 | |||
| Slide | 3998888072 | PC4 | t-test | 5.46e-04 | -2.396 | -3.9448 | -0.8480 |
| Slide | 101070190050 | PC4 | t-test | 6.87e-04 | 2.342 | 0.8010 | 3.8839 |
| Slide | 200078650231 | PC4 | t-test | 1.05e-03 | 2.381 | 0.7575 | 4.0051 |
| Sex | M | PC4 | t-test | 8.66e-03 | 0.305 | 0.0531 | 0.5579 |
| AGE_all | PC4 | F-test | 9.11e-43 | 197.618 | |||
| Batch | PC5 | F-test | 2.71e-38 | 175.106 | |||
| Batch | 1 | PC5 | t-test | 7.60e-45 | 1.205 | 1.0231 | 1.3875 |
| Batch | 2 | PC5 | t-test | 8.77e-41 | -1.170 | -1.3558 | -0.9838 |
| Slide | PC5 | F-test | 1.62e-61 | 4.651 | |||
| Slide | 3998888170 | PC5 | t-test | 5.00e-03 | 1.498 | 0.3053 | 2.6913 |
| Slide | 3998888041 | PC5 | t-test | 1.10e-03 | 1.818 | 0.5736 | 3.0632 |
| Slide | 3998888083 | PC5 | t-test | 7.61e-03 | 1.425 | 0.2315 | 2.6179 |
| Slide | 3998888086 | PC5 | t-test | 8.66e-03 | 1.463 | 0.2172 | 2.7093 |
| Slide | 101070190002 | PC5 | t-test | 1.28e-09 | 3.234 | 2.0479 | 4.4200 |
| Slide | 101070190016 | PC5 | t-test | 1.64e-05 | 2.398 | 1.1560 | 3.6403 |
| Slide | 101070190031 | PC5 | t-test | 3.21e-05 | 2.217 | 1.0266 | 3.4066 |
| Slide | 101070190050 | PC5 | t-test | 2.35e-07 | 2.758 | 1.5686 | 3.9473 |
| Slide | 101103430092 | PC5 | t-test | 2.15e-10 | 3.560 | 2.3123 | 4.8072 |
| Slide | 101103430120 | PC5 | t-test | 1.86e-05 | 2.383 | 1.1405 | 3.6250 |
| Slide | 101103430129 | PC5 | t-test | 1.21e-03 | 1.727 | 0.5350 | 2.9193 |
| Slide | 100973270154 | PC5 | t-test | 7.28e-04 | 1.803 | 0.6109 | 2.9946 |
| Slide | 100973270155 | PC5 | t-test | 2.78e-05 | 2.446 | 1.1434 | 3.7490 |
| Slide | 100973270162 | PC5 | t-test | 1.56e-04 | 2.017 | 0.8258 | 3.2077 |
| Slide | 100973330047 | PC5 | t-test | 2.12e-03 | 1.640 | 0.4477 | 2.8326 |
| Slide | 100973330054 | PC5 | t-test | 9.63e-04 | 1.839 | 0.5945 | 3.0840 |
| Slide | 100973330088 | PC5 | t-test | 1.49e-04 | 2.036 | 0.8375 | 3.2349 |
| Slide | 101070190063 | PC5 | t-test | 4.93e-03 | 1.643 | 0.3371 | 2.9494 |
| Slide | 100973270083 | PC5 | t-test | 7.73e-03 | -1.427 | -2.6237 | -0.2296 |
| Slide | 100973270100 | PC5 | t-test | 6.48e-03 | -1.453 | -2.6463 | -0.2601 |
| Slide | 101070190123 | PC5 | t-test | 4.25e-03 | -1.529 | -2.7241 | -0.3337 |
| Slide | 101070190018 | PC5 | t-test | 6.23e-03 | -1.529 | -2.7782 | -0.2796 |
| Slide | 101070190111 | PC5 | t-test | 6.30e-03 | -1.596 | -2.9028 | -0.2901 |
| Slide | 101103430112 | PC5 | t-test | 1.46e-03 | -1.703 | -2.8981 | -0.5077 |
| Slide | 101103430118 | PC5 | t-test | 2.22e-04 | -1.969 | -3.1604 | -0.7782 |
| Slide | 200078650234 | PC5 | t-test | 1.75e-03 | -1.670 | -2.8621 | -0.4773 |
| Slide | 200078650130 | PC5 | t-test | 1.90e-03 | 1.756 | 0.4925 | 3.0203 |
| Slide | 200078650021 | PC5 | t-test | 8.15e-03 | 1.630 | 0.2527 | 3.0064 |
| Slide | 200090270100 | PC5 | t-test | 4.33e-03 | -1.523 | -2.7156 | -0.3298 |
| Slide | 200090270152 | PC5 | t-test | 1.67e-03 | -1.837 | -3.1424 | -0.5314 |
| Slide | 200090280005 | PC5 | t-test | 8.85e-03 | -1.398 | -2.5909 | -0.2043 |
| Slide | 200090280007 | PC5 | t-test | 4.35e-03 | -1.756 | -3.1324 | -0.3796 |
| Slide | 200090280009 | PC5 | t-test | 2.54e-03 | -1.764 | -3.0693 | -0.4578 |
| Slide | 200090280019 | PC5 | t-test | 6.30e-04 | -1.824 | -3.0154 | -0.6319 |
| Slide | 200090270021 | PC5 | t-test | 9.72e-04 | 2.153 | 0.6948 | 3.6117 |
| Slide | 200090280042 | PC5 | t-test | 4.36e-03 | -1.522 | -2.7145 | -0.3287 |
| Slide | 200078650240 | PC5 | t-test | 8.79e-03 | -1.399 | -2.5921 | -0.2055 |
| Slide | 200078650258 | PC5 | t-test | 6.88e-04 | -1.891 | -3.1353 | -0.6463 |
| Sex | PC5 | F-test | 2.25e-78 | 386.136 | |||
| Sex | M | PC5 | t-test | 4.10e-80 | -1.646 | -1.8253 | -1.4661 |
| Sex | F | PC5 | t-test | 2.24e-92 | 1.687 | 1.5158 | 1.8578 |
| AGE_all | PC5 | F-test | 6.15e-05 | 16.128 | |||
| Batch | PC6 | F-test | 3.10e-25 | 110.873 | |||
| Batch | 1 | PC6 | t-test | 5.08e-22 | 0.743 | 0.5770 | 0.9086 |
| Batch | 2 | PC6 | t-test | 1.13e-32 | -0.989 | -1.1662 | -0.8113 |
| Slide | PC6 | F-test | 4.71e-18 | 2.387 | |||
| Slide | 3998888024 | PC6 | t-test | 8.93e-03 | 1.171 | 0.1701 | 2.1729 |
| Slide | 3998888071 | PC6 | t-test | 2.31e-03 | 1.425 | 0.3802 | 2.4702 |
| Slide | 3998888081 | PC6 | t-test | 3.80e-03 | 1.296 | 0.2953 | 2.2973 |
| Slide | 3998888083 | PC6 | t-test | 3.30e-05 | 1.862 | 0.8609 | 2.8628 |
| Slide | 3998888086 | PC6 | t-test | 1.03e-03 | 1.534 | 0.4896 | 2.5788 |
| Slide | 101070190016 | PC6 | t-test | 7.32e-03 | 1.255 | 0.2090 | 2.3002 |
| Slide | 101070190050 | PC6 | t-test | 8.55e-03 | 1.182 | 0.1772 | 2.1864 |
| Slide | 3998888017 | PC6 | t-test | 4.30e-03 | 1.335 | 0.2901 | 2.3808 |
| Slide | 101070190070 | PC6 | t-test | 7.76e-03 | 1.193 | 0.1913 | 2.1941 |
| Slide | 100973270128 | PC6 | t-test | 3.15e-04 | -1.702 | -2.7567 | -0.6466 |
| Slide | 100973330003 | PC6 | t-test | 2.79e-03 | 1.339 | 0.3383 | 2.3401 |
| Slide | 100973330048 | PC6 | t-test | 3.70e-03 | 1.305 | 0.3004 | 2.3105 |
| Slide | 100973330051 | PC6 | t-test | 5.94e-03 | 1.238 | 0.2323 | 2.2437 |
| Slide | 101070190017 | PC6 | t-test | 1.95e-04 | -1.673 | -2.6762 | -0.6702 |
| Slide | 101070190051 | PC6 | t-test | 4.71e-04 | -1.690 | -2.7689 | -0.6103 |
| Slide | 101130760004 | PC6 | t-test | 1.85e-05 | -1.948 | -2.9637 | -0.9328 |
| Slide | 101070190088 | PC6 | t-test | 9.48e-03 | -1.214 | -2.2594 | -0.1679 |
| Slide | 101130760008 | PC6 | t-test | 2.93e-04 | -1.621 | -2.6208 | -0.6214 |
| Slide | 101103430114 | PC6 | t-test | 2.77e-03 | -1.476 | -2.5788 | -0.3736 |
| Slide | 200078650234 | PC6 | t-test | 1.00e-03 | -1.473 | -2.4732 | -0.4725 |
| Slide | 200078650257 | PC6 | t-test | 2.35e-03 | -1.366 | -2.3700 | -0.3626 |
| Slide | 200078650130 | PC6 | t-test | 4.36e-13 | -3.550 | -4.6387 | -2.4614 |
| Slide | 200078650090 | PC6 | t-test | 1.70e-04 | -1.853 | -2.9527 | -0.7524 |
| Slide | 200078650045 | PC6 | t-test | 4.04e-03 | -1.288 | -2.2889 | -0.2868 |
| Slide | 200078650194 | PC6 | t-test | 7.51e-05 | -1.956 | -3.0592 | -0.8531 |
| Slide | 200078650118 | PC6 | t-test | 6.10e-03 | -1.286 | -2.3339 | -0.2378 |
| Slide | 200078650258 | PC6 | t-test | 9.51e-03 | -1.216 | -2.2645 | -0.1679 |
| sentrix_row | 5 | PC6 | t-test | 6.17e-04 | -0.337 | -0.5547 | -0.1186 |
| Sex | PC6 | F-test | 1.44e-19 | 83.717 | |||
| Sex | M | PC6 | t-test | 5.10e-15 | 0.649 | 0.4706 | 0.8277 |
| Sex | F | PC6 | t-test | 8.28e-31 | -0.906 | -1.0750 | -0.7377 |
| AGE_all | PC6 | F-test | 3.08e-05 | 17.454 | |||
| Batch | PC7 | F-test | 2.33e-29 | 130.920 | |||
| Batch | 1 | PC7 | t-test | 1.14e-29 | -0.968 | -1.1516 | -0.7846 |
| Batch | 2 | PC7 | t-test | 1.38e-26 | 0.894 | 0.7140 | 1.0732 |
| Slide | PC7 | F-test | 4.89e-101 | 6.697 | |||
| Slide | 3998888071 | PC7 | t-test | 2.64e-03 | 1.665 | 0.4279 | 2.9031 |
| Slide | 3998888081 | PC7 | t-test | 1.72e-03 | 1.663 | 0.4778 | 2.8477 |
| Slide | 101070190002 | PC7 | t-test | 1.87e-14 | -4.071 | -5.2510 | -2.8912 |
| Slide | 101070190016 | PC7 | t-test | 1.14e-11 | -3.774 | -5.0101 | -2.5376 |
| Slide | 101070190031 | PC7 | t-test | 2.36e-09 | -3.156 | -4.3325 | -1.9788 |
| Slide | 101070190050 | PC7 | t-test | 3.31e-06 | -2.462 | -3.6437 | -1.2812 |
| Slide | 101103430091 | PC7 | t-test | 3.04e-13 | -3.875 | -5.0556 | -2.6947 |
| Slide | 101103430092 | PC7 | t-test | 7.10e-05 | -2.198 | -3.4337 | -0.9630 |
| Slide | 101103430120 | PC7 | t-test | 6.04e-07 | -2.770 | -4.0078 | -1.5321 |
| Slide | 101103430129 | PC7 | t-test | 1.01e-07 | -2.824 | -4.0061 | -1.6422 |
| Slide | 3998888017 | PC7 | t-test | 2.99e-03 | -1.644 | -2.8819 | -0.4066 |
| Slide | 100973270154 | PC7 | t-test | 2.25e-04 | -1.955 | -3.1391 | -0.7715 |
| Slide | 100973270155 | PC7 | t-test | 1.02e-03 | -1.907 | -3.2037 | -0.6095 |
| Slide | 100973270162 | PC7 | t-test | 1.36e-03 | -1.699 | -2.8838 | -0.5142 |
| Slide | 100973330047 | PC7 | t-test | 1.66e-04 | -1.996 | -3.1796 | -0.8124 |
| Slide | 100973330065 | PC7 | t-test | 3.95e-04 | -1.961 | -3.1978 | -0.7249 |
| Slide | 100973330037 | PC7 | t-test | 7.08e-03 | -1.492 | -2.7300 | -0.2536 |
| Slide | 101070190089 | PC7 | t-test | 7.99e-04 | -1.778 | -2.9624 | -0.5934 |
| Slide | 101070190033 | PC7 | t-test | 2.87e-03 | 1.651 | 0.4137 | 2.8890 |
| Slide | 101070190051 | PC7 | t-test | 2.51e-04 | 2.026 | 0.7902 | 3.2625 |
| Slide | 101070190115 | PC7 | t-test | 4.10e-03 | 1.667 | 0.3689 | 2.9648 |
| Slide | 101070190071 | PC7 | t-test | 7.54e-04 | 1.786 | 0.6019 | 2.9709 |
| Slide | 101070190161 | PC7 | t-test | 5.37e-03 | 1.477 | 0.2912 | 2.6625 |
| Slide | 101103430113 | PC7 | t-test | 4.99e-03 | 1.555 | 0.3173 | 2.7932 |
| Slide | 200078650257 | PC7 | t-test | 5.72e-03 | 1.466 | 0.2802 | 2.6515 |
| Slide | 200090270102 | PC7 | t-test | 1.07e-04 | 2.144 | 0.9084 | 3.3796 |
| Slide | 200090270158 | PC7 | t-test | 9.95e-05 | 2.067 | 0.8810 | 3.2524 |
| Slide | 200090280007 | PC7 | t-test | 4.77e-03 | 1.727 | 0.3593 | 3.0952 |
| Slide | 200090280009 | PC7 | t-test | 8.07e-06 | 2.588 | 1.2942 | 3.8820 |
| Slide | 200090280019 | PC7 | t-test | 2.17e-03 | 1.626 | 0.4412 | 2.8114 |
| Slide | 200078650255 | PC7 | t-test | 7.68e-03 | 1.477 | 0.2385 | 2.7150 |
| Slide | 200078650001 | PC7 | t-test | 5.19e-04 | -2.412 | -3.9649 | -0.8595 |
| Slide | 200078650041 | PC7 | t-test | 3.77e-03 | -1.604 | -2.8422 | -0.3666 |
| Slide | 200078650089 | PC7 | t-test | 1.19e-04 | -2.233 | -3.5290 | -0.9376 |
| Sex | PC7 | F-test | 4.96e-84 | 417.647 | |||
| Sex | M | PC7 | t-test | 3.00e-85 | -1.631 | -1.8030 | -1.4592 |
| Sex | F | PC7 | t-test | 3.75e-83 | 1.567 | 1.3984 | 1.7357 |
| AGE_all | PC7 | F-test | 5.19e-10 | 39.010 | |||
| Sample.Set | PC8 | F-test | 8.05e-04 | 7.152 | |||
| Sample.Set | George_Mellick | PC8 | t-test | 6.95e-04 | -0.391 | -0.6317 | -0.1502 |
| Sample.Set | Martin_Kennedy | PC8 | t-test | 9.87e-05 | 0.473 | 0.2031 | 0.7437 |
| Slide | PC8 | F-test | 2.88e-03 | 1.350 | |||
| Slide | 3998888041 | PC8 | t-test | 6.76e-03 | -1.339 | -2.4447 | -0.2341 |
| Slide | 101070190002 | PC8 | t-test | 8.78e-06 | 2.102 | 1.0467 | 3.1567 |
| Slide | 101103430092 | PC8 | t-test | 2.24e-03 | 1.527 | 0.4109 | 2.6438 |
| Slide | 101103430129 | PC8 | t-test | 9.11e-03 | 1.235 | 0.1765 | 2.2938 |
| Slide | 100973330054 | PC8 | t-test | 2.05e-03 | 1.524 | 0.4192 | 2.6286 |
| Slide | 100973330088 | PC8 | t-test | 4.41e-06 | 2.202 | 1.1317 | 3.2716 |
| Slide | 101070190038 | PC8 | t-test | 5.55e-03 | 1.438 | 0.2789 | 2.5966 |
| sentrix_row | PC8 | F-test | 6.78e-04 | 4.303 | |||
| sentrix_row | 1 | PC8 | t-test | 9.55e-04 | -0.333 | -0.5567 | -0.1093 |
| sentrix_row | 6 | PC8 | t-test | 1.24e-04 | 0.387 | 0.1635 | 0.6109 |
| Sex | PC8 | F-test | 1.88e-99 | 505.817 | |||
| Sex | M | PC8 | t-test | 3.65e-102 | 1.623 | 1.4691 | 1.7777 |
| Sex | F | PC8 | t-test | 5.86e-105 | -1.582 | -1.7312 | -1.4328 |
| AGE_all | PC8 | F-test | 4.78e-08 | 30.047 | |||
| Batch | PC9 | F-test | 8.15e-04 | 11.244 | |||
| Batch | 1 | PC9 | t-test | 6.61e-04 | -0.244 | -0.3994 | -0.0878 |
| Batch | 2 | PC9 | t-test | 9.17e-05 | 0.286 | 0.1271 | 0.4449 |
| Slide | 101070190051 | PC9 | t-test | 1.00e-06 | 2.205 | 1.1995 | 3.2100 |
| Slide | 200078650130 | PC9 | t-test | 4.73e-03 | 1.306 | 0.2728 | 2.3390 |
| Slide | 200078650250 | PC9 | t-test | 2.52e-03 | 1.279 | 0.3332 | 2.2255 |
| Sex | PC9 | F-test | 1.79e-19 | 83.261 | |||
| Sex | M | PC9 | t-test | 1.41e-19 | 0.677 | 0.5164 | 0.8377 |
| Sex | F | PC9 | t-test | 1.12e-20 | -0.644 | -0.7928 | -0.4944 |
| AGE_all | PC9 | F-test | 9.16e-25 | 108.604 | |||
| Batch | PC10 | F-test | 9.45e-04 | 10.966 | |||
| Batch | 1 | PC10 | t-test | 2.29e-04 | 0.266 | 0.1088 | 0.4229 |
| Sample.Set | PC10 | F-test | 4.11e-03 | 5.510 | |||
| Sample.Set | George_Mellick | PC10 | t-test | 1.80e-03 | 0.328 | 0.1086 | 0.5482 |
| Sample.Set | Martin_Kennedy | PC10 | t-test | 6.03e-03 | -0.300 | -0.5423 | -0.0568 |
| Slide | PC10 | F-test | 4.91e-74 | 5.288 | |||
| Slide | 3998888072 | PC10 | t-test | 2.30e-04 | -1.584 | -2.5441 | -0.6234 |
| Slide | 3998888170 | PC10 | t-test | 1.46e-03 | 1.368 | 0.4072 | 2.3280 |
| Slide | 3998888171 | PC10 | t-test | 8.23e-03 | 1.184 | 0.1824 | 2.1852 |
| Slide | 3998888061 | PC10 | t-test | 6.85e-03 | -1.160 | -2.1189 | -0.2011 |
| Slide | 3998888068 | PC10 | t-test | 8.07e-07 | -2.112 | -3.0663 | -1.1573 |
| Slide | 3998888071 | PC10 | t-test | 4.44e-05 | -1.827 | -2.8258 | -0.8282 |
| Slide | 3998888080 | PC10 | t-test | 4.02e-07 | -2.179 | -3.1383 | -1.2207 |
| Slide | 3998888081 | PC10 | t-test | 2.31e-05 | -1.813 | -2.7695 | -0.8571 |
| Slide | 3998888087 | PC10 | t-test | 2.64e-03 | -1.290 | -2.2480 | -0.3310 |
| Slide | 101070190002 | PC10 | t-test | 4.63e-05 | 1.749 | 0.7906 | 2.7077 |
| Slide | 101070190016 | PC10 | t-test | 1.86e-10 | 2.842 | 1.8495 | 3.8343 |
| Slide | 101070190031 | PC10 | t-test | 8.06e-07 | 2.116 | 1.1598 | 3.0729 |
| Slide | 101070190050 | PC10 | t-test | 1.76e-06 | 2.057 | 1.0972 | 3.0176 |
| Slide | 101103430091 | PC10 | t-test | 1.23e-09 | 2.613 | 1.6556 | 3.5701 |
| Slide | 101103430092 | PC10 | t-test | 9.32e-11 | 2.903 | 1.9059 | 3.9000 |
| Slide | 101103430120 | PC10 | t-test | 2.37e-03 | 1.361 | 0.3604 | 2.3620 |
| Slide | 101103430129 | PC10 | t-test | 5.02e-03 | 1.204 | 0.2450 | 2.1625 |
| Slide | 100973270154 | PC10 | t-test | 2.17e-08 | 2.404 | 1.4469 | 3.3601 |
| Slide | 100973270155 | PC10 | t-test | 8.07e-03 | 1.244 | 0.1945 | 2.2945 |
| Slide | 100973270162 | PC10 | t-test | 1.31e-04 | 1.639 | 0.6818 | 2.5959 |
| Slide | 100973330047 | PC10 | t-test | 4.58e-08 | 2.353 | 1.3940 | 3.3124 |
| Slide | 100973330054 | PC10 | t-test | 2.79e-04 | 1.627 | 0.6270 | 2.6264 |
| Slide | 100973330065 | PC10 | t-test | 1.69e-03 | 1.410 | 0.4064 | 2.4137 |
| Slide | 100973330088 | PC10 | t-test | 3.68e-03 | 1.246 | 0.2872 | 2.2044 |
| Slide | 100973270129 | PC10 | t-test | 3.63e-03 | -1.248 | -2.2063 | -0.2891 |
| Slide | 100973330043 | PC10 | t-test | 5.48e-03 | 1.244 | 0.2429 | 2.2453 |
| Slide | 101070190089 | PC10 | t-test | 3.77e-03 | 1.243 | 0.2839 | 2.2012 |
| Slide | 200090270152 | PC10 | t-test | 1.94e-03 | -1.455 | -2.5045 | -0.4059 |
| Slide | 200090270158 | PC10 | t-test | 8.26e-05 | -1.687 | -2.6439 | -0.7303 |
| Slide | 200090280007 | PC10 | t-test | 2.26e-03 | -1.511 | -2.6168 | -0.4051 |
| Slide | 200078650001 | PC10 | t-test | 4.08e-03 | 1.611 | 0.3572 | 2.8644 |
| Slide | 200090270021 | PC10 | t-test | 1.85e-03 | 1.634 | 0.4612 | 2.8062 |
| Slide | 200078650041 | PC10 | t-test | 4.63e-04 | 1.567 | 0.5674 | 2.5674 |
| Slide | 200078650064 | PC10 | t-test | 3.80e-03 | 1.359 | 0.3097 | 2.4089 |
| Slide | 200078650240 | PC10 | t-test | 7.74e-03 | -1.143 | -2.1016 | -0.1836 |
| sentrix_row | PC10 | F-test | 1.98e-04 | 4.869 | |||
| sentrix_row | 1 | PC10 | t-test | 7.18e-05 | 0.367 | 0.1620 | 0.5721 |
| sentrix_row | 6 | PC10 | t-test | 9.58e-04 | 0.306 | 0.1005 | 0.5118 |
| Sex | PC10 | F-test | 3.50e-57 | 271.924 | |||
| Sex | M | PC10 | t-test | 1.99e-55 | -1.075 | -1.2194 | -0.9315 |
| Sex | F | PC10 | t-test | 6.61e-63 | 1.165 | 1.0185 | 1.3117 |
| Batch | PC11 | F-test | 9.70e-13 | 51.609 | |||
| Batch | 1 | PC11 | t-test | 1.33e-12 | -0.478 | -0.6247 | -0.3323 |
| Batch | 2 | PC11 | t-test | 4.89e-12 | 0.474 | 0.3257 | 0.6227 |
| Sample.Set | PC11 | F-test | 5.34e-04 | 7.565 | |||
| Sample.Set | Ian Hickie | PC11 | t-test | 6.76e-04 | 0.648 | 0.2227 | 1.0742 |
| Slide | PC11 | F-test | 1.10e-11 | 2.002 | |||
| Slide | 3998888061 | PC11 | t-test | 3.96e-03 | -1.199 | -2.1296 | -0.2692 |
| Slide | 3998888081 | PC11 | t-test | 2.07e-03 | -1.276 | -2.2017 | -0.3502 |
| Slide | 3998888083 | PC11 | t-test | 4.95e-03 | -1.165 | -2.0907 | -0.2385 |
| Slide | 3998888086 | PC11 | t-test | 7.56e-04 | -1.457 | -2.4229 | -0.4906 |
| Slide | 3998888176 | PC11 | t-test | 4.61e-03 | -1.174 | -2.1001 | -0.2480 |
| Slide | 100973270129 | PC11 | t-test | 7.06e-03 | -1.116 | -2.0427 | -0.1901 |
| Slide | 100973270135 | PC11 | t-test | 3.22e-04 | -1.489 | -2.4142 | -0.5645 |
| Slide | 101070190123 | PC11 | t-test | 1.50e-03 | -1.315 | -2.2406 | -0.3895 |
| Slide | 101070190017 | PC11 | t-test | 5.17e-03 | 1.161 | 0.2329 | 2.0885 |
| Slide | 200078650040 | PC11 | t-test | 3.61e-03 | 1.324 | 0.3074 | 2.3404 |
| Slide | 200078650188 | PC11 | t-test | 1.08e-03 | 1.483 | 0.4698 | 2.4962 |
| Slide | 200078650226 | PC11 | t-test | 9.76e-03 | 1.071 | 0.1446 | 1.9974 |
| Slide | 200078650189 | PC11 | t-test | 2.63e-03 | 1.249 | 0.3213 | 2.1771 |
| Slide | 200078650232 | PC11 | t-test | 4.68e-04 | 1.454 | 0.5257 | 2.3824 |
| Sex | PC11 | F-test | 2.89e-07 | 26.510 | |||
| Sex | M | PC11 | t-test | 4.21e-08 | 0.379 | 0.2295 | 0.5284 |
| Sex | F | PC11 | t-test | 2.58e-08 | -0.379 | -0.5266 | -0.2304 |
| AGE_all | PC11 | F-test | 1.15e-06 | 23.808 | |||
| Batch | PC12 | F-test | 6.01e-08 | 29.596 | |||
| Batch | 1 | PC12 | t-test | 2.66e-07 | -0.345 | -0.4900 | -0.1990 |
| Batch | 2 | PC12 | t-test | 3.52e-07 | 0.340 | 0.1952 | 0.4849 |
| Sample.Set | Ian Hickie | PC12 | t-test | 9.43e-03 | 0.488 | 0.0682 | 0.9075 |
| Slide | PC12 | F-test | 3.65e-36 | 3.361 | |||
| Slide | 3998888067 | PC12 | t-test | 1.19e-04 | -1.638 | -2.5879 | -0.6875 |
| Slide | 3998888024 | PC12 | t-test | 2.69e-03 | -1.224 | -2.1354 | -0.3126 |
| Slide | 3998888071 | PC12 | t-test | 2.99e-03 | -1.264 | -2.2158 | -0.3124 |
| Slide | 3998888080 | PC12 | t-test | 2.34e-04 | -1.500 | -2.4100 | -0.5895 |
| Slide | 3998888081 | PC12 | t-test | 1.12e-04 | -1.578 | -2.4892 | -0.6659 |
| Slide | 3998888086 | PC12 | t-test | 6.01e-03 | -1.170 | -2.1221 | -0.2180 |
| Slide | 3998888087 | PC12 | t-test | 6.63e-04 | -1.391 | -2.3044 | -0.4784 |
| Slide | 101070190050 | PC12 | t-test | 2.10e-06 | 1.936 | 1.0255 | 2.8458 |
| Slide | 101103430091 | PC12 | t-test | 3.25e-04 | 1.474 | 0.5581 | 2.3899 |
| Slide | 100973270155 | PC12 | t-test | 1.66e-03 | 1.404 | 0.4067 | 2.4020 |
| Slide | 100973270162 | PC12 | t-test | 2.19e-05 | 1.729 | 0.8199 | 2.6382 |
| Slide | 100973330065 | PC12 | t-test | 2.82e-03 | 1.272 | 0.3200 | 2.2234 |
| Slide | 101070190062 | PC12 | t-test | 9.70e-04 | 1.345 | 0.4343 | 2.2561 |
| Slide | 101070190150 | PC12 | t-test | 4.57e-05 | -1.661 | -2.5704 | -0.7514 |
| Slide | 100973270100 | PC12 | t-test | 7.56e-04 | -1.376 | -2.2887 | -0.4634 |
| Slide | 100973270135 | PC12 | t-test | 2.42e-06 | -1.928 | -2.8398 | -1.0157 |
| Slide | 100973330003 | PC12 | t-test | 1.85e-03 | -1.270 | -2.1809 | -0.3585 |
| Slide | 100973330037 | PC12 | t-test | 4.50e-05 | -1.739 | -2.6907 | -0.7876 |
| Slide | 100994770033 | PC12 | t-test | 5.48e-04 | 1.471 | 0.5203 | 2.4221 |
| Slide | 200078650250 | PC12 | t-test | 7.50e-03 | 1.091 | 0.1790 | 2.0026 |
| Slide | 200078650040 | PC12 | t-test | 5.88e-03 | 1.235 | 0.2327 | 2.2368 |
| Slide | 200090270021 | PC12 | t-test | 9.57e-04 | 1.648 | 0.5331 | 2.7621 |
| Slide | 200078650041 | PC12 | t-test | 5.56e-03 | 1.181 | 0.2290 | 2.1330 |
| sentrix_row | 6 | PC12 | t-test | 3.21e-03 | 0.256 | 0.0631 | 0.4483 |
| Sex | PC12 | F-test | 5.08e-10 | 39.055 | |||
| Sex | M | PC12 | t-test | 2.23e-10 | 0.427 | 0.2814 | 0.5718 |
| Sex | F | PC12 | t-test | 1.26e-10 | -0.430 | -0.5755 | -0.2846 |
| Batch | 2 | PC13 | t-test | 9.61e-03 | -0.164 | -0.3013 | -0.0262 |
| Sample.Set | PC13 | F-test | 1.08e-08 | 18.523 | |||
| Sample.Set | George_Mellick | PC13 | t-test | 3.31e-04 | 0.323 | 0.1354 | 0.5114 |
| Sample.Set | Martin_Kennedy | PC13 | t-test | 4.52e-13 | -0.676 | -0.8825 | -0.4694 |
| Slide | PC13 | F-test | 3.98e-03 | 1.335 | |||
| Slide | 3998888170 | PC13 | t-test | 9.18e-04 | 1.136 | 0.3704 | 1.9021 |
| Slide | 3998888171 | PC13 | t-test | 4.38e-03 | 1.019 | 0.2197 | 1.8185 |
| Slide | 3998888180 | PC13 | t-test | 3.21e-03 | 1.007 | 0.2434 | 1.7715 |
| Slide | 3998888080 | PC13 | t-test | 9.56e-03 | -0.906 | -1.6873 | -0.1244 |
| Slide | 101070190031 | PC13 | t-test | 8.07e-03 | 0.906 | 0.1415 | 1.6703 |
| Slide | 101070190070 | PC13 | t-test | 1.04e-03 | -1.124 | -1.8892 | -0.3582 |
| Slide | 101070190090 | PC13 | t-test | 9.70e-03 | -0.924 | -1.7218 | -0.1253 |
| Slide | 101070190148 | PC13 | t-test | 2.56e-03 | -1.031 | -1.7951 | -0.2672 |
| Slide | 101070190017 | PC13 | t-test | 1.04e-03 | -1.132 | -1.9036 | -0.3612 |
| Slide | 101130760004 | PC13 | t-test | 2.18e-05 | -1.490 | -2.2730 | -0.7065 |
| Slide | 101103430118 | PC13 | t-test | 8.22e-04 | -1.181 | -1.9694 | -0.3922 |
| Slide | 200090270102 | PC13 | t-test | 6.38e-03 | -0.985 | -1.7923 | -0.1779 |
| Slide | 200090280019 | PC13 | t-test | 5.84e-03 | -0.944 | -1.7101 | -0.1788 |
| Slide | 200078650210 | PC13 | t-test | 7.43e-03 | -1.010 | -1.8537 | -0.1666 |
| Slide | 200078650049 | PC13 | t-test | 2.79e-03 | 1.251 | 0.3158 | 2.1853 |
| sentrix_row | 6 | PC13 | t-test | 5.56e-03 | -0.208 | -0.3749 | -0.0416 |
| Sex | PC13 | F-test | 2.07e-04 | 13.825 | |||
| Sex | M | PC13 | t-test | 8.94e-05 | -0.249 | -0.3868 | -0.1114 |
| AGE_all | PC13 | F-test | 5.11e-51 | 239.820 | |||
| Batch | PC14 | F-test | 2.26e-03 | 9.350 | |||
| Batch | 2 | PC14 | t-test | 7.41e-04 | -0.179 | -0.2938 | -0.0637 |
| Sample.Set | Martin_Kennedy | PC14 | t-test | 8.25e-03 | -0.139 | -0.2556 | -0.0219 |
| Slide | PC14 | F-test | 1.69e-07 | 1.715 | |||
| Slide | 3998888171 | PC14 | t-test | 2.12e-03 | -0.643 | -1.1108 | -0.1755 |
| Slide | 3998888022 | PC14 | t-test | 7.31e-04 | 0.699 | 0.2366 | 1.1606 |
| Slide | 3998888068 | PC14 | t-test | 6.29e-03 | -0.536 | -0.9739 | -0.0975 |
| Slide | 3998888071 | PC14 | t-test | 4.12e-03 | -0.588 | -1.0469 | -0.1301 |
| Slide | 3998888080 | PC14 | t-test | 2.30e-04 | -0.725 | -1.1637 | -0.2854 |
| Slide | 3998888081 | PC14 | t-test | 8.67e-07 | -0.965 | -1.4029 | -0.5278 |
| Slide | 3998888083 | PC14 | t-test | 4.28e-03 | -0.560 | -0.9981 | -0.1219 |
| Slide | 3998888086 | PC14 | t-test | 7.36e-05 | -0.811 | -1.2670 | -0.3541 |
| Slide | 3998888087 | PC14 | t-test | 6.30e-04 | -0.670 | -1.1074 | -0.2321 |
| Slide | 3998919138 | PC14 | t-test | 2.30e-04 | -0.722 | -1.1590 | -0.2841 |
| Slide | 100973330065 | PC14 | t-test | 3.15e-15 | -1.791 | -2.2946 | -1.2872 |
| Slide | 101070190150 | PC14 | t-test | 1.22e-06 | -1.005 | -1.4665 | -0.5430 |
| Slide | 100973270085 | PC14 | t-test | 8.99e-05 | 0.801 | 0.3443 | 1.2573 |
| Slide | 100973270094 | PC14 | t-test | 7.51e-07 | 1.022 | 0.5614 | 1.4825 |
| Slide | 100973270100 | PC14 | t-test | 7.15e-04 | 0.665 | 0.2260 | 1.1040 |
| Slide | 100973330043 | PC14 | t-test | 7.46e-06 | 0.929 | 0.4665 | 1.3919 |
| Slide | 100973330048 | PC14 | t-test | 4.53e-03 | 0.568 | 0.1208 | 1.0153 |
| Slide | 101070190089 | PC14 | t-test | 3.28e-04 | 0.710 | 0.2687 | 1.1520 |
| Slide | 101070190097 | PC14 | t-test | 1.16e-03 | 0.697 | 0.2178 | 1.1765 |
| Slide | 101070190098 | PC14 | t-test | 3.44e-04 | 0.704 | 0.2648 | 1.1436 |
| Slide | 101070190110 | PC14 | t-test | 1.32e-10 | 1.279 | 0.8364 | 1.7222 |
| Slide | 101070190123 | PC14 | t-test | 8.16e-04 | 0.656 | 0.2182 | 1.0936 |
| Slide | 101070190148 | PC14 | t-test | 1.31e-05 | 0.861 | 0.4202 | 1.3021 |
| Slide | 101130760004 | PC14 | t-test | 6.61e-03 | -0.553 | -1.0078 | -0.0979 |
| Slide | 101070190038 | PC14 | t-test | 5.88e-03 | 0.596 | 0.1124 | 1.0798 |
| Slide | 200078650130 | PC14 | t-test | 9.61e-08 | -1.251 | -1.7734 | -0.7283 |
| Slide | 200078650090 | PC14 | t-test | 1.02e-03 | 0.710 | 0.2272 | 1.1937 |
| Slide | 200078650110 | PC14 | t-test | 3.32e-05 | -0.825 | -1.2691 | -0.3815 |
| Slide | 200090270102 | PC14 | t-test | 1.79e-04 | -0.775 | -1.2363 | -0.3130 |
| Slide | 200090270158 | PC14 | t-test | 3.51e-03 | -0.576 | -1.0169 | -0.1351 |
| Slide | 200078650045 | PC14 | t-test | 9.94e-04 | -0.657 | -1.1031 | -0.2112 |
| Slide | 200078650188 | PC14 | t-test | 3.38e-18 | -2.192 | -2.7493 | -1.6339 |
| Slide | 200078650244 | PC14 | t-test | 4.44e-13 | -1.661 | -2.1705 | -1.1517 |
| Slide | 200078650189 | PC14 | t-test | 8.78e-03 | -0.523 | -0.9690 | -0.0769 |
| Slide | 200090270021 | PC14 | t-test | 4.04e-04 | 0.853 | 0.3144 | 1.3917 |
| Slide | 200090280029 | PC14 | t-test | 6.78e-04 | -0.715 | -1.1846 | -0.2449 |
| Slide | 200078650051 | PC14 | t-test | 1.36e-04 | -0.801 | -1.2701 | -0.3324 |
| Slide | 200078650232 | PC14 | t-test | 5.51e-07 | -1.054 | -1.5236 | -0.5849 |
| Slide | 200078650237 | PC14 | t-test | 7.74e-03 | 0.549 | 0.0883 | 1.0101 |
| Slide | 200078650240 | PC14 | t-test | 3.51e-04 | -0.707 | -1.1491 | -0.2653 |
| Slide | 200078650258 | PC14 | t-test | 4.73e-03 | -0.582 | -1.0421 | -0.1216 |
| sentrix_row | PC14 | F-test | 4.36e-03 | 3.428 | |||
| sentrix_row | 1 | PC14 | t-test | 4.30e-03 | -0.139 | -0.2463 | -0.0309 |
| sentrix_row | 2 | PC14 | t-test | 3.12e-08 | -0.322 | -0.4503 | -0.1931 |
| Sex | M | PC14 | t-test | 2.68e-04 | -0.176 | -0.2804 | -0.0714 |
| Batch | PC15 | F-test | 9.12e-03 | 6.813 | |||
| Batch | 2 | PC15 | t-test | 4.33e-05 | 0.213 | 0.0999 | 0.3260 |
| Sample.Set | Ian Hickie | PC15 | t-test | 6.92e-05 | 0.467 | 0.2051 | 0.7282 |
| Slide | PC15 | F-test | 2.57e-07 | 1.702 | |||
| Slide | 3998888177 | PC15 | t-test | 1.53e-04 | -0.966 | -1.5363 | -0.3963 |
| Slide | 3998888022 | PC15 | t-test | 8.93e-05 | 1.046 | 0.4500 | 1.6423 |
| Slide | 100973270154 | PC15 | t-test | 2.24e-03 | -0.778 | -1.3476 | -0.2094 |
| Slide | 100973270155 | PC15 | t-test | 6.22e-03 | -0.763 | -1.3865 | -0.1396 |
| Slide | 101070190049 | PC15 | t-test | 2.75e-03 | -0.765 | -1.3364 | -0.1941 |
| Slide | 101070190150 | PC15 | t-test | 1.99e-03 | 0.791 | 0.2193 | 1.3619 |
| Slide | 100973270083 | PC15 | t-test | 2.76e-10 | -1.615 | -2.1848 | -1.0460 |
| Slide | 100973270089 | PC15 | t-test | 5.44e-03 | -0.743 | -1.3400 | -0.1456 |
| Slide | 100973270100 | PC15 | t-test | 5.34e-03 | -0.710 | -1.2790 | -0.1403 |
| Slide | 100973270128 | PC15 | t-test | 1.44e-10 | -1.714 | -2.3081 | -1.1190 |
| Slide | 100973270135 | PC15 | t-test | 9.40e-05 | -0.996 | -1.5652 | -0.4266 |
| Slide | 100973330044 | PC15 | t-test | 1.38e-03 | -0.871 | -1.4787 | -0.2626 |
| Slide | 101070190033 | PC15 | t-test | 1.12e-03 | -0.876 | -1.4774 | -0.2754 |
| Slide | 101070190115 | PC15 | t-test | 1.55e-03 | -0.882 | -1.5055 | -0.2595 |
| Slide | 200078650161 | PC15 | t-test | 7.81e-04 | 0.860 | 0.2882 | 1.4323 |
| Slide | 200078650130 | PC15 | t-test | 5.99e-03 | 0.745 | 0.1392 | 1.3512 |
| Slide | 200078650090 | PC15 | t-test | 9.93e-03 | 0.725 | 0.0965 | 1.3538 |
| Slide | 200090270158 | PC15 | t-test | 5.72e-04 | 0.880 | 0.3094 | 1.4510 |
| Slide | 200078650045 | PC15 | t-test | 4.62e-03 | 0.723 | 0.1527 | 1.2942 |
| Slide | 200078650188 | PC15 | t-test | 1.77e-03 | 0.886 | 0.2530 | 1.5199 |
| Slide | 200078650231 | PC15 | t-test | 2.64e-03 | 0.805 | 0.2068 | 1.4033 |
| Slide | 200078650255 | PC15 | t-test | 2.98e-07 | 1.395 | 0.7883 | 2.0022 |
| Slide | 200090270021 | PC15 | t-test | 8.76e-03 | 0.822 | 0.1209 | 1.5225 |
| Slide | 200078650129 | PC15 | t-test | 3.55e-11 | 1.833 | 1.2175 | 2.4487 |
| Slide | 200078650237 | PC15 | t-test | 3.58e-03 | 0.776 | 0.1807 | 1.3721 |
| sentrix_row | 3 | PC15 | t-test | 3.70e-04 | 0.215 | 0.0810 | 0.3484 |
| AGE_all | PC15 | F-test | 2.72e-06 | 22.139 | |||
| Batch | PC16 | F-test | 8.60e-04 | 11.143 | |||
| Batch | 1 | PC16 | t-test | 1.34e-05 | 0.223 | 0.1116 | 0.3345 |
| Batch | 2 | PC16 | t-test | 2.07e-03 | -0.164 | -0.2798 | -0.0483 |
| Slide | PC16 | F-test | 1.57e-10 | 1.927 | |||
| Slide | 3998888042 | PC16 | t-test | 1.97e-04 | 1.087 | 0.4351 | 1.7397 |
| Slide | 3998888068 | PC16 | t-test | 4.63e-03 | 0.824 | 0.1736 | 1.4744 |
| Slide | 3998888071 | PC16 | t-test | 4.70e-04 | 1.062 | 0.3838 | 1.7405 |
| Slide | 3998888080 | PC16 | t-test | 1.24e-05 | 1.272 | 0.6226 | 1.9218 |
| Slide | 3998888081 | PC16 | t-test | 4.56e-04 | 1.022 | 0.3708 | 1.6733 |
| Slide | 3998888083 | PC16 | t-test | 8.27e-06 | 1.298 | 0.6484 | 1.9479 |
| Slide | 3998888086 | PC16 | t-test | 2.10e-04 | 1.131 | 0.4496 | 1.8120 |
| Slide | 3998888087 | PC16 | t-test | 4.51e-05 | 1.186 | 0.5370 | 1.8348 |
| Slide | 101070190016 | PC16 | t-test | 4.72e-04 | 1.062 | 0.3834 | 1.7401 |
| Slide | 101070190031 | PC16 | t-test | 1.25e-03 | 0.944 | 0.2905 | 1.5980 |
| Slide | 3998919043 | PC16 | t-test | 8.88e-03 | 0.764 | 0.1113 | 1.4170 |
| Slide | 100973330065 | PC16 | t-test | 2.44e-07 | -1.605 | -2.2981 | -0.9119 |
| Slide | 100973270094 | PC16 | t-test | 5.49e-03 | -0.844 | -1.5231 | -0.1647 |
| Slide | 101070190115 | PC16 | t-test | 4.18e-03 | -0.913 | -1.6248 | -0.2006 |
| Slide | 200078650130 | PC16 | t-test | 1.27e-04 | -1.195 | -1.8906 | -0.4987 |
| Slide | 200078650040 | PC16 | t-test | 6.05e-03 | 0.880 | 0.1634 | 1.5959 |
| Slide | 200078650123 | PC16 | t-test | 1.77e-05 | 1.251 | 0.6008 | 1.9019 |
| sentrix_row | PC16 | F-test | 9.60e-05 | 5.199 | |||
| sentrix_row | 2 | PC16 | t-test | 8.34e-05 | 0.268 | 0.1171 | 0.4198 |
| sentrix_row | 6 | PC16 | t-test | 9.40e-06 | -0.279 | -0.4188 | -0.1395 |
| Sex | PC16 | F-test | 2.20e-04 | 13.701 | |||
| Sex | M | PC16 | t-test | 5.22e-05 | 0.207 | 0.0964 | 0.3185 |
| Sex | F | PC16 | t-test | 4.10e-03 | -0.154 | -0.2713 | -0.0368 |
| AGE_all | PC16 | F-test | 1.61e-04 | 14.297 | |||
| Batch | PC17 | F-test | 8.27e-40 | 182.704 | |||
| Batch | 1 | PC17 | t-test | 1.54e-43 | -0.729 | -0.8406 | -0.6167 |
| Batch | 2 | PC17 | t-test | 3.09e-41 | 0.706 | 0.5946 | 0.8178 |
| Sample.Set | PC17 | F-test | 4.43e-04 | 7.752 | |||
| Sample.Set | Ian Hickie | PC17 | t-test | 3.05e-05 | 0.621 | 0.2891 | 0.9538 |
| Slide | PC17 | F-test | 3.35e-49 | 4.026 | |||
| Slide | 3998888019 | PC17 | t-test | 7.42e-05 | -1.282 | -2.0050 | -0.5599 |
| Slide | 3998888067 | PC17 | t-test | 9.40e-03 | -0.879 | -1.6350 | -0.1224 |
| Slide | 3998888072 | PC17 | t-test | 4.01e-04 | -1.148 | -1.8730 | -0.4236 |
| Slide | 3998888109 | PC17 | t-test | 2.13e-05 | -1.439 | -2.1949 | -0.6835 |
| Slide | 3998888170 | PC17 | t-test | 1.26e-11 | -2.191 | -2.9099 | -1.4716 |
| Slide | 3998888171 | PC17 | t-test | 3.44e-03 | -0.989 | -1.7454 | -0.2335 |
| Slide | 3998888177 | PC17 | t-test | 3.44e-09 | -1.911 | -2.6309 | -1.1908 |
| Slide | 3998888180 | PC17 | t-test | 5.78e-05 | -1.301 | -2.0240 | -0.5790 |
| Slide | 3998888022 | PC17 | t-test | 2.86e-03 | -1.009 | -1.7647 | -0.2529 |
| Slide | 3998888024 | PC17 | t-test | 2.52e-04 | -1.185 | -1.9079 | -0.4619 |
| Slide | 3998888041 | PC17 | t-test | 8.78e-03 | -0.887 | -1.6429 | -0.1303 |
| Slide | 3998888059 | PC17 | t-test | 4.63e-05 | -1.443 | -2.2341 | -0.6522 |
| Slide | 3998888061 | PC17 | t-test | 1.28e-06 | -1.583 | -2.3124 | -0.8542 |
| Slide | 3998888071 | PC17 | t-test | 2.34e-03 | -1.029 | -1.7851 | -0.2735 |
| Slide | 3998888083 | PC17 | t-test | 4.23e-03 | -0.927 | -1.6508 | -0.2027 |
| Slide | 3998888086 | PC17 | t-test | 3.92e-04 | -1.199 | -1.9537 | -0.4435 |
| Slide | 3998888087 | PC17 | t-test | 3.83e-03 | -0.937 | -1.6608 | -0.2129 |
| Slide | 3998888176 | PC17 | t-test | 3.19e-03 | -0.955 | -1.6793 | -0.2314 |
| Slide | 3998888017 | PC17 | t-test | 1.86e-03 | -1.053 | -1.8083 | -0.2969 |
| Slide | 3998888023 | PC17 | t-test | 5.99e-03 | -0.930 | -1.6860 | -0.1737 |
| Slide | 3998888065 | PC17 | t-test | 3.31e-03 | -0.952 | -1.6755 | -0.2276 |
| Slide | 3998920007 | PC17 | t-test | 9.12e-05 | -1.269 | -1.9926 | -0.5447 |
| Slide | 100973270157 | PC17 | t-test | 3.62e-04 | 1.159 | 0.4330 | 1.8840 |
| Slide | 100973330048 | PC17 | t-test | 4.94e-03 | 0.911 | 0.1865 | 1.6347 |
| Slide | 100994770033 | PC17 | t-test | 2.51e-03 | 1.027 | 0.2677 | 1.7872 |
| Slide | 101070190088 | PC17 | t-test | 3.90e-03 | 0.976 | 0.2204 | 1.7324 |
| Slide | 200078650250 | PC17 | t-test | 1.89e-03 | 1.006 | 0.2827 | 1.7302 |
| Slide | 200078650021 | PC17 | t-test | 2.17e-03 | 1.146 | 0.3106 | 1.9809 |
| Slide | 200090280009 | PC17 | t-test | 7.40e-05 | 1.404 | 0.6131 | 2.1954 |
| Slide | 200078650261 | PC17 | t-test | 6.03e-03 | 0.890 | 0.1655 | 1.6138 |
| Slide | 200078650159 | PC17 | t-test | 4.69e-03 | 0.956 | 0.2004 | 1.7125 |
| Slide | 200078650187 | PC17 | t-test | 5.62e-03 | 0.937 | 0.1807 | 1.6930 |
| Slide | 200078650237 | PC17 | t-test | 3.86e-03 | 0.979 | 0.2217 | 1.7363 |
| sentrix_row | PC17 | F-test | 1.31e-17 | 18.133 | |||
| sentrix_row | 1 | PC17 | t-test | 1.60e-12 | -0.502 | -0.6586 | -0.3450 |
| sentrix_row | 2 | PC17 | t-test | 8.74e-07 | -0.351 | -0.5096 | -0.1930 |
| sentrix_row | 5 | PC17 | t-test | 5.63e-03 | 0.191 | 0.0379 | 0.3443 |
| sentrix_row | 6 | PC17 | t-test | 2.31e-07 | 0.354 | 0.2025 | 0.5056 |
| Sex | PC17 | F-test | 1.15e-03 | 10.598 | |||
| Sex | M | PC17 | t-test | 3.14e-04 | -0.197 | -0.3157 | -0.0786 |
| Sex | F | PC17 | t-test | 1.25e-03 | 0.172 | 0.0557 | 0.2890 |
| AGE_all | PC17 | F-test | 3.09e-03 | 8.774 | |||
| Batch | PC18 | F-test | 7.22e-61 | 291.358 | |||
| Batch | 1 | PC18 | t-test | 8.28e-67 | 0.856 | 0.7522 | 0.9599 |
| Batch | 2 | PC18 | t-test | 6.21e-57 | -0.796 | -0.9017 | -0.6909 |
| Sample.Set | PC18 | F-test | 3.67e-06 | 12.600 | |||
| Sample.Set | George_Mellick | PC18 | t-test | 8.00e-03 | 0.206 | 0.0436 | 0.3677 |
| Sample.Set | Ian Hickie | PC18 | t-test | 9.35e-08 | -0.749 | -1.0608 | -0.4364 |
| Slide | PC18 | F-test | 5.92e-49 | 4.014 | |||
| Slide | 3998888042 | PC18 | t-test | 2.41e-03 | 0.926 | 0.2441 | 1.6080 |
| Slide | 3998888068 | PC18 | t-test | 5.74e-04 | 1.051 | 0.3690 | 1.7320 |
| Slide | 3998888071 | PC18 | t-test | 7.14e-03 | 0.860 | 0.1454 | 1.5742 |
| Slide | 3998888080 | PC18 | t-test | 7.32e-03 | 0.819 | 0.1364 | 1.5011 |
| Slide | 3998888081 | PC18 | t-test | 5.12e-04 | 1.060 | 0.3785 | 1.7414 |
| Slide | 3998888176 | PC18 | t-test | 8.30e-03 | 0.806 | 0.1234 | 1.4882 |
| Slide | 101103430129 | PC18 | t-test | 2.10e-04 | 1.135 | 0.4511 | 1.8180 |
| Slide | 3998920007 | PC18 | t-test | 5.19e-03 | -0.855 | -1.5389 | -0.1713 |
| Slide | 100973330054 | PC18 | t-test | 5.61e-03 | 0.883 | 0.1704 | 1.5952 |
| Slide | 100973330065 | PC18 | t-test | 4.69e-03 | 0.904 | 0.1894 | 1.6178 |
| Slide | 101070190049 | PC18 | t-test | 8.88e-03 | 0.799 | 0.1164 | 1.4812 |
| Slide | 101070190070 | PC18 | t-test | 5.11e-03 | 0.856 | 0.1729 | 1.5399 |
| Slide | 101070190090 | PC18 | t-test | 3.15e-04 | 1.147 | 0.4360 | 1.8587 |
| Slide | 101070190150 | PC18 | t-test | 5.72e-03 | 0.845 | 0.1616 | 1.5293 |
| Slide | 101130760005 | PC18 | t-test | 6.15e-03 | 0.836 | 0.1541 | 1.5186 |
| Slide | 100973270085 | PC18 | t-test | 1.12e-04 | 1.236 | 0.5217 | 1.9508 |
| Slide | 100973270129 | PC18 | t-test | 1.46e-06 | 1.467 | 0.7880 | 2.1468 |
| Slide | 100973270135 | PC18 | t-test | 1.76e-06 | 1.472 | 0.7849 | 2.1586 |
| Slide | 100973270157 | PC18 | t-test | 1.65e-06 | 1.463 | 0.7823 | 2.1444 |
| Slide | 100973330003 | PC18 | t-test | 6.21e-03 | 0.835 | 0.1530 | 1.5175 |
| Slide | 101070190122 | PC18 | t-test | 9.81e-05 | 1.240 | 0.5294 | 1.9513 |
| Slide | 101070190123 | PC18 | t-test | 2.47e-03 | 0.924 | 0.2420 | 1.6060 |
| Slide | 100994770033 | PC18 | t-test | 3.33e-03 | -0.936 | -1.6478 | -0.2234 |
| Slide | 200078650161 | PC18 | t-test | 3.00e-03 | -0.908 | -1.5916 | -0.2242 |
| Slide | 200078650003 | PC18 | t-test | 1.38e-03 | -1.019 | -1.7308 | -0.3070 |
| Slide | 200078650130 | PC18 | t-test | 8.74e-04 | -1.085 | -1.8128 | -0.3566 |
| Slide | 200078650055 | PC18 | t-test | 4.03e-03 | -0.919 | -1.6324 | -0.2047 |
| Slide | 200078650045 | PC18 | t-test | 1.53e-03 | -0.969 | -1.6526 | -0.2858 |
| Slide | 200078650170 | PC18 | t-test | 6.37e-03 | -0.833 | -1.5151 | -0.1505 |
| Slide | 200078650173 | PC18 | t-test | 4.79e-03 | -0.899 | -1.6115 | -0.1868 |
| Slide | 200078650231 | PC18 | t-test | 2.17e-03 | -0.977 | -1.6891 | -0.2650 |
| Slide | 200078650001 | PC18 | t-test | 8.14e-05 | -1.571 | -2.4612 | -0.6807 |
| Slide | 200078650246 | PC18 | t-test | 7.63e-03 | -0.814 | -1.4968 | -0.1321 |
| Slide | 200090270021 | PC18 | t-test | 2.99e-03 | -1.108 | -1.9429 | -0.2739 |
| Slide | 200090280040 | PC18 | t-test | 6.21e-03 | -0.835 | -1.5176 | -0.1530 |
| Slide | 200090280042 | PC18 | t-test | 6.37e-03 | -0.833 | -1.5151 | -0.1505 |
| Slide | 200078650041 | PC18 | t-test | 1.22e-04 | -1.227 | -1.9395 | -0.5138 |
| sentrix_row | 6 | PC18 | t-test | 4.05e-03 | 0.189 | 0.0431 | 0.3351 |
| Sex | PC18 | F-test | 3.96e-04 | 12.596 | |||
| Sex | M | PC18 | t-test | 1.03e-05 | 0.231 | 0.1176 | 0.3443 |
| Sex | F | PC18 | t-test | 1.00e-03 | -0.169 | -0.2807 | -0.0567 |
| Batch | PC19 | F-test | 4.92e-07 | 25.472 | |||
| Batch | 1 | PC19 | t-test | 1.58e-07 | 0.269 | 0.1573 | 0.3801 |
| Batch | 2 | PC19 | t-test | 2.07e-06 | -0.242 | -0.3526 | -0.1313 |
| Sample.Set | PC19 | F-test | 5.90e-05 | 9.788 | |||
| Sample.Set | George_Mellick | PC19 | t-test | 2.28e-03 | -0.231 | -0.3891 | -0.0728 |
| Sample.Set | Martin_Kennedy | PC19 | t-test | 1.63e-06 | 0.379 | 0.2033 | 0.5541 |
| Slide | PC19 | F-test | 7.91e-60 | 4.565 | |||
| Slide | 3998888067 | PC19 | t-test | 4.25e-04 | -1.136 | -1.8557 | -0.4159 |
| Slide | 3998888072 | PC19 | t-test | 7.25e-03 | -0.828 | -1.5167 | -0.1387 |
| Slide | 3998888170 | PC19 | t-test | 1.96e-05 | -1.314 | -2.0012 | -0.6272 |
| Slide | 3998888177 | PC19 | t-test | 5.97e-04 | -1.060 | -1.7498 | -0.3703 |
| Slide | 3998888180 | PC19 | t-test | 3.43e-03 | -0.902 | -1.5906 | -0.2131 |
| Slide | 3998888008 | PC19 | t-test | 9.19e-04 | -1.023 | -1.7131 | -0.3335 |
| Slide | 3998888022 | PC19 | t-test | 7.80e-04 | -1.081 | -1.7996 | -0.3622 |
| Slide | 101103430092 | PC19 | t-test | 8.86e-03 | 0.846 | 0.1235 | 1.5683 |
| Slide | 3998919058 | PC19 | t-test | 1.22e-04 | -1.239 | -1.9589 | -0.5189 |
| Slide | 100973330047 | PC19 | t-test | 1.59e-03 | 0.975 | 0.2850 | 1.6652 |
| Slide | 101070190061 | PC19 | t-test | 1.22e-03 | 1.041 | 0.3219 | 1.7596 |
| Slide | 101070190062 | PC19 | t-test | 4.96e-03 | 0.866 | 0.1771 | 1.5549 |
| Slide | 101070190063 | PC19 | t-test | 6.25e-06 | 1.522 | 0.7704 | 2.2738 |
| Slide | 101070190070 | PC19 | t-test | 5.89e-08 | 1.675 | 0.9867 | 2.3637 |
| Slide | 101070190090 | PC19 | t-test | 1.55e-03 | 1.018 | 0.2994 | 1.7373 |
| Slide | 101070190150 | PC19 | t-test | 2.37e-04 | 1.132 | 0.4445 | 1.8202 |
| Slide | 101130760005 | PC19 | t-test | 4.17e-05 | 1.264 | 0.5756 | 1.9529 |
| Slide | 100973270128 | PC19 | t-test | 3.37e-06 | 1.493 | 0.7761 | 2.2095 |
| Slide | 100973270167 | PC19 | t-test | 1.20e-03 | 1.042 | 0.3235 | 1.7612 |
| Slide | 100973330003 | PC19 | t-test | 1.09e-05 | 1.359 | 0.6695 | 2.0484 |
| Slide | 100973330037 | PC19 | t-test | 7.25e-06 | 1.449 | 0.7282 | 2.1693 |
| Slide | 100973330051 | PC19 | t-test | 2.28e-03 | 0.940 | 0.2516 | 1.6289 |
| Slide | 101070190089 | PC19 | t-test | 1.51e-03 | 0.978 | 0.2893 | 1.6663 |
| Slide | 101070190123 | PC19 | t-test | 1.09e-03 | 1.009 | 0.3187 | 1.6994 |
| Slide | 101070190148 | PC19 | t-test | 8.79e-04 | 1.027 | 0.3374 | 1.7171 |
| Slide | 101070190017 | PC19 | t-test | 4.32e-04 | 1.087 | 0.3973 | 1.7770 |
| Slide | 101130760004 | PC19 | t-test | 4.48e-03 | 0.881 | 0.1884 | 1.5740 |
| Slide | 101103430114 | PC19 | t-test | 7.95e-03 | 0.898 | 0.1417 | 1.6543 |
| Slide | 200078650003 | PC19 | t-test | 3.24e-03 | -0.948 | -1.6667 | -0.2283 |
| Slide | 200078650250 | PC19 | t-test | 2.28e-04 | -1.135 | -1.8232 | -0.4475 |
| Slide | 200078650021 | PC19 | t-test | 4.35e-03 | -1.014 | -1.8089 | -0.2192 |
| Slide | 200078650066 | PC19 | t-test | 7.84e-03 | -0.856 | -1.5754 | -0.1364 |
| Slide | 200078650001 | PC19 | t-test | 5.50e-03 | -1.119 | -2.0198 | -0.2180 |
| Slide | 200090270021 | PC19 | t-test | 2.96e-04 | -1.364 | -2.2056 | -0.5221 |
| Slide | 200090280042 | PC19 | t-test | 6.87e-03 | -0.833 | -1.5223 | -0.1442 |
| Slide | 200078650109 | PC19 | t-test | 1.34e-03 | -1.035 | -1.7561 | -0.3143 |
| Slide | 200078650159 | PC19 | t-test | 6.59e-03 | -0.874 | -1.5939 | -0.1550 |
| Slide | 200078650224 | PC19 | t-test | 3.45e-03 | -0.904 | -1.5948 | -0.2133 |
| sentrix_row | PC19 | F-test | 3.63e-19 | 19.686 | |||
| sentrix_row | 1 | PC19 | t-test | 1.43e-16 | -0.545 | -0.6906 | -0.3999 |
| sentrix_row | 2 | PC19 | t-test | 9.58e-03 | -0.176 | -0.3267 | -0.0251 |
| sentrix_row | 5 | PC19 | t-test | 2.41e-06 | 0.312 | 0.1652 | 0.4580 |
| sentrix_row | 6 | PC19 | t-test | 6.41e-07 | 0.328 | 0.1823 | 0.4744 |
| Sex | PC19 | F-test | 1.55e-03 | 10.043 | |||
| Sex | M | PC19 | t-test | 7.31e-03 | -0.141 | -0.2541 | -0.0269 |
| Sex | F | PC19 | t-test | 7.08e-04 | 0.171 | 0.0608 | 0.2813 |
| AGE_all | PC19 | F-test | 2.64e-03 | 9.062 | |||
| Batch | PC20 | F-test | 1.14e-05 | 19.361 | |||
| Batch | 1 | PC20 | t-test | 1.47e-07 | 0.241 | 0.1412 | 0.3401 |
| Batch | 2 | PC20 | t-test | 1.66e-05 | -0.207 | -0.3111 | -0.1025 |
| Sample.Set | PC20 | F-test | 2.37e-03 | 6.062 | |||
| Sample.Set | George_Mellick | PC20 | t-test | 6.18e-05 | 0.281 | 0.1348 | 0.4277 |
| Sample.Set | Martin_Kennedy | PC20 | t-test | 1.84e-03 | -0.223 | -0.3820 | -0.0636 |
| Slide | PC20 | F-test | 1.60e-16 | 2.298 | |||
| Slide | 3998888072 | PC20 | t-test | 4.13e-04 | 0.967 | 0.3554 | 1.5781 |
| Slide | 3998888170 | PC20 | t-test | 7.82e-07 | 1.354 | 0.7428 | 1.9654 |
| Slide | 3998888171 | PC20 | t-test | 1.51e-07 | 1.495 | 0.8603 | 2.1292 |
| Slide | 3998888177 | PC20 | t-test | 3.93e-06 | 1.259 | 0.6504 | 1.8676 |
| Slide | 3998888180 | PC20 | t-test | 6.25e-05 | 1.095 | 0.4844 | 1.7059 |
| Slide | 3998888008 | PC20 | t-test | 8.91e-04 | 0.908 | 0.2975 | 1.5181 |
| Slide | 3998888041 | PC20 | t-test | 7.26e-03 | 0.768 | 0.1286 | 1.4077 |
| Slide | 3998888045 | PC20 | t-test | 1.76e-03 | 0.892 | 0.2549 | 1.5299 |
| Slide | 3998888023 | PC20 | t-test | 3.29e-03 | 0.839 | 0.2010 | 1.4764 |
| Slide | 100973330065 | PC20 | t-test | 1.46e-03 | -0.910 | -1.5487 | -0.2713 |
| Slide | 101070190049 | PC20 | t-test | 2.97e-03 | -0.816 | -1.4293 | -0.2021 |
| Slide | 101070190090 | PC20 | t-test | 1.77e-07 | -1.490 | -2.1264 | -0.8542 |
| Slide | 101070190150 | PC20 | t-test | 4.66e-04 | -0.956 | -1.5660 | -0.3458 |
| Slide | 101130760005 | PC20 | t-test | 2.86e-04 | -0.993 | -1.6046 | -0.3816 |
| Slide | 200090280005 | PC20 | t-test | 1.25e-03 | -0.884 | -1.4950 | -0.2720 |
| Slide | 200078650041 | PC20 | t-test | 9.87e-03 | 0.737 | 0.0985 | 1.3746 |
| Slide | 200078650232 | PC20 | t-test | 7.20e-04 | -0.929 | -1.5420 | -0.3152 |
| sentrix_row | PC20 | F-test | 3.06e-12 | 12.781 | |||
| sentrix_row | 1 | PC20 | t-test | 3.09e-14 | 0.455 | 0.3226 | 0.5866 |
| sentrix_row | 5 | PC20 | t-test | 1.33e-06 | -0.290 | -0.4229 | -0.1572 |
| Sex | PC20 | F-test | 2.36e-04 | 13.570 | |||
| Sex | M | PC20 | t-test | 2.24e-04 | -0.176 | -0.2797 | -0.0728 |
| Sex | F | PC20 | t-test | 7.21e-06 | 0.209 | 0.1074 | 0.3106 |
## R version 3.2.2 (2015-08-14)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS release 6.2 (Final)
##
## locale:
## [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C
## [3] LC_TIME=en_US.iso885915 LC_COLLATE=en_US.iso885915
## [5] LC_MONETARY=en_US.iso885915 LC_MESSAGES=en_US.iso885915
## [7] LC_PAPER=en_US.iso885915 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] meffil_1.0.0 quadprog_1.5-5 DNAcopy_1.44.0
## [4] fastICA_1.2-0 lme4_1.1-12 Matrix_1.2-2
## [7] multcomp_1.4-6 TH.data_1.0-7 survival_2.39-5
## [10] mvtnorm_1.0-5 matrixStats_0.50.2 markdown_0.7.7
## [13] gridExtra_2.2.1 Cairo_1.5-9 knitr_1.13
## [16] reshape2_1.4.1 plyr_1.8.4 ggplot2_2.1.0
## [19] limma_3.26.9 MASS_7.3-43 illuminaio_0.12.0
## [22] devtools_1.12.0
##
## loaded via a namespace (and not attached):
## [1] Rcpp_0.12.5 highr_0.6 formatR_1.4 nloptr_1.0.4
## [5] tools_3.2.2 digest_0.6.9 base64_2.0 evaluate_0.9
## [9] memoise_1.0.0 gtable_0.2.0 nlme_3.1-128 lattice_0.20-33
## [13] withr_1.0.2 stringr_1.0.0 grid_3.2.2 minqa_1.2.4
## [17] magrittr_1.5 scales_0.4.0 codetools_0.2-14 splines_3.2.2
## [21] colorspace_1.2-6 labeling_0.3 sandwich_2.3-4 stringi_1.1.1
## [25] openssl_0.9.3 munsell_0.4.3 zoo_1.7-13